Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1197 ATGGCATCTTCTAGGTTGGCTGGAGGATTAGTACAATCTTCATCAAGTTCTGGGATTTTCTACCAAGGAGAAGGTCCGGGGCAGTCCTCGGCTATTGTTAACTCTCATTTGGGCCAGTCTTTTGCAAATTCATCAAACTCGATTGCTGGCTGTTCTGATTTTGGTCCAGTTTCTGGAGATATGAATAATGCAGTTTTAAACAGTGTGGCTAATTCGGGACCAAGTGTTGGGGCGAGTTCTTTAGTTACGGATGCAAACTCTGCACTTTCTGGGGGGCCGCATTTGCAGAGGAGTGCAAGCATCAATAATGAGTCGTATATGCGGTTACCTGCATCACCCATGTCATTCACTTCAAATAACATTAGTGTTTCGGGGTCCTCGGTTATGGACGGGTCTTGTGTAGTGCAGCAAAATTCTCAGCAAGACCAGAATATCCAACACGTGCAGCAAGGTGCTTCACATGCTACATCATTACCAACATCACATATGGGACATGGATCCATTCCAATTGGTGCAAAACTTCAGGCGTCTTTCATTCAAGATCCAAATGATTTTCCCCAGGTGCAGAAGAAACCCCGGTTAGATATAAAGCAGGAAGATGTGCTGCAACAACAGGTTTTGCAGCAGCTATTTCAAAGACAGGATTCTATGCCGGCACAAAACCGCAATACACAACATTTACAAGCTTTATTTCAGCAACAAAGAATGAGACAGCAGCAGCAGATCTTTCAGTCTATGCCTCAGTTACAGAGAGTGCAATTGCAGCAGCAGCAACAGCAACAACAGCAAATGCAGTTGAGGCAGCAATTGCAACAACAGGCAATGCAGCCTGTTTCACCCATGAAGCGCCCATTTGACGGTGGTGTATGTGCTCGTCGACTGATGCAATATCTGTATCATCAAAGACAAAGACCCCCTGAGAATAGTATTGCCTACTGGAGGAAATTTGTAACGGAATATTACTCTCCCCGTGCAAAGAAAAGATGGTGCTTGTCACTATATGAGAACGTTGGCCATCATGCGCTTGGTGTGTTCCCCCAGGCAGCTATGGATGCATGGCATTGTGACATCTGTGGTTCCAAATCAGGAAGGGGCTTTGAGGCTACATTTGAAGTGCTCCCGAGACTCAGTGAGATCAAATTTGGTAGTGGAGTTATTGATGAGCTTTTGTTTCTAGACCTTCCTCGTGAAGTGAGATTTGCTTCTGGAGTTATGATGTTAGAGTATGGAAAAGCAGTTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTGTTTTATTTACCCAAGACTTAAAGATTTTGTCCTGGGAATTTTGTGCACGGCGCCACGAAGAACTCCTTCCACGTAGGTTGGTTGCACCACAGGTGAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAGCACGATTGCTGAAAGTGGATCTGATGGTCTTTCCCAGAAAGATTTACAAACAAATAGCAATATGGTGCTGACTGCTGGCCGTCAGCTTGCGAAGAGTTTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATATGTGAGGTGTTTGCAGATATCGGAGGTTGTCAGCAGTATGAAAGATCTGATTTCTTTCTGCCGAGATCAGAAAGTTGGACCAATTGAGGGCTTGAAAAGTTATCCTAGACATGCCACTGCAGCTAAGCTCCAGATGCAAAAAATGCAGGAGATGGAGCAGATAGAGCAGATAGCAAGTGCTCAAGGACTTCCGACGGACCGCAACTCAATTAATAAGCTGATGGCAATGCACTCTGAATTTGATAACCATGTGAATAACAACCATCAAATGATCAACCGAGGAGCTTTAGGTTCGGCACAAGCTGCTTTGGCACTGAGTACCTACCAGAGTTTCATGAGGCAGAACTCTATGAATTCCAATCAAAGCCCTCACCAACAGGAGGCCTCGTCTTCCTTTAATAATTCAAACTATAATTCTCCCTCCACTCTCCAGGGGGCTACATCCTTAATACCTGGATCCATCCAGAACTCAGCTGTTAGTGGCTTTTCAAATTCTCATATATCTCAGCAAAAGCAATTGCAGCAGCTGCAACAGCAATCACCGAGTGCCGGTTCCTTACTCCAACAAAACCATCCCCAGTCGATCCAAGGCAATCAAGCCTTGCAACAACAGATGTTTCAGCAGCTACTGCAGATGTCAAGTAACAATAAGGGTGGCATGCAACAGCAATCCTATCTTGGACCAAATGCAAACCGGGGTATGGCCAGAAGGGGTGGTATGAGTTTTGGAGGCAGTGCCTTGGCTGCACCCGTGGCCTCGGCAAATCTGTCTGGGAGCAACATCCCCGGTCCAAGTAGAAGCAATAGTTTCAAAGCAGCTTCAAACAGTGAGACGTCTGCTGGAAACAGTGGATTCAACCAAAAGACATCTGACTTGCCGCAAGATATTCATTTGCCAGATGGTGTGGTACAAGAAATGGGTCAAGATTTTTCCGAAAGCGGGTTTCTTAACAATGATCTTGATGATGCTATGGGCTATGTCTGGAAGGCTTGA 2556 45.5 MASSRLAGGLVQSSSSSGIFYQGEGPGQSSAIVNSHLGQSFANSSNSIAGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINNESYMRLPASPMSFTSNNISVSGSSVMDGSCVVQQNSQQDQNIQHVQQGASHATSLPTSHMGHGSIPIGAKLQASFIQDPNDFPQVQKKPRLDIKQEDVLQQQVLQQLFQRQDSMPAQNRNTQHLQALFQQQRMRQQQQIFQSMPQLQRVQLQQQQQQQQQMQLRQQLQQQAMQPVSPMKRPFDGGVCARRLMQYLYHQRQRPPENSIAYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWHCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPREVRFASGVMMLEYGKAVQESVYEQLRVVREGQLRVLFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGSDGLSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVSSMKDLISFCRDQKVGPIEGLKSYPRHATAAKLQMQKMQEMEQIEQIASAQGLPTDRNSINKLMAMHSEFDNHVNNNHQMINRGALGSAQAALALSTYQSFMRQNSMNSNQSPHQQEASSSFNNSNYNSPSTLQGATSLIPGSIQNSAVSGFSNSHISQQKQLQQLQQQSPSAGSLLQQNHPQSIQGNQALQQQMFQQLLQMSSNNKGGMQQQSYLGPNANRGMARRGGMSFGGSALAAPVASANLSGSNIPGPSRSNSFKAASNSETSAGNSGFNQKTSDLPQDIHLPDGVVQEMGQDFSESGFLNNDLDDAMGYVWKA 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44282975 44289092 + evm.model.ptg000004l.184 HCH11g1197 554664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1197 851 MobiDBLite consensus disorder prediction 780 814 - -
HCH11g1197 851 MobiDBLite consensus disorder prediction 682 712 - -
HCH11g1197 851 Pfam LIM-domain binding protein 293 553 IPR029005 -
HCH11g1197 851 MobiDBLite consensus disorder prediction 636 665 - -
HCH11g1197 851 Coils Coil 249 269 - -
HCH11g1197 851 MobiDBLite consensus disorder prediction 780 816 - -
HCH11g1197 851 PANTHER LIM DOMAIN-BINDING PROTEIN 15 840 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1197 HCH-Chr11:44282975 HCH13g0189 HCH-Chr13:1266322 5.90E-100 dispersed
HCH11g1197 HCH-Chr11:44282975 HCH5g0778 HCH-Chr5:5962685 2.70E-270 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1197 - - - 0.0