Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1204 ATGCCAAGTGGTGCAATCACTGATCCTAGCTTTCTCTCTTATCAAATTCCCAATTCAATATCAAGTGCCTCTGACCTCTCTTCCATAAGGAAAATGGATGGTTATGGTGATAGCTTTGATCCAAATGTAGTTGTGAGGATGAGGGAAGATGAGTATGACAGCAGATCAGGCAGTGATAACATAGATGGTGGTATATCAGGTGATGATCAAGATGCAATCGACGAACAACCGCCGAGAAAGAAGAAGTATCATCGGCATACTCCTCATCAGATCCAAGAGCTTGAGACTTTATTCAAGGAATGTCCTCATCCTGATGATAAACAAAGAAATGAACTCAGTAGGCGGCTTGGGTTGGAGGCAAAGCAAGTAAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATTGAGCGCCATGAGAATGCGATTCTCAAGCAAGAAAATGATAAGCTACGGGCCGAAAATAGTATGATGAAGAATGCGATCACCAACCCAATATGCAATGCGTGTGGTGGTCCTTCTATTCCTGTTCATGTTTCATTTGAAGAACACCAGCTAAGGATCGAGAATGCCAGATTAAGGGATGAACTGCTCCACTCATATACAATCACAAACAAGTTTCTAGGCTGGCCGGTTTTGCCCGTTGTCAATCATGGCTCTATGCAAAGCTTTGACTCTGACTTGGAACTTTCTGTAGGAAGAAATGGAATGGGGTGTTTGAGTACGGTTTCCGATCCCATTCCTATGGGACTTAACTTGGGGGATGGACTTTTCAGTGCTGCCCCTGTGATGCCTATCGTTAAGCCGGAAATAGACATGCCGTGTAGTGATGTACCACTTGAGAGAACAATACTTGTGGATCTTGCTTTGGCAGCTATGGATGAATTGGTGAAGATGGCTCAAATGGACAGCCCCATGTGGATCAAAAGTCGAGATGGTGTCGAGAGAGAGGTATTGAATGTTGAGGAATATACAAGGACATTTCCTTCTTGTATTGGTGCAAAGCATAATCGTTGGACAAGAGAGGCCACCAGAGATACTAGTACTGTGATCATCAACAGCTTGGCACTTGTTGAGACTCTGATGGATGTAAACCGGTGGACAGAAATGTTTCCTTGCTTGATTGCTAGAGCTACCACAATTGATGTGATATCGAGTGGAATGGGCGGAACCAGAAACGGGGCATTACAAGTTATGCATACTGAGCTTCGGGTGCTTTCACCCCTGGTTCCTGTCCGCACACTTCGGTTCCTCCGCTTCTGTAAGCAGCATGCAGATGGTATATGGGCTGTAGTTGATGTTTCCATTGACTTCAGCCAAGAAGGTTCGAATTCACAGTCATTTTTCAACTGTAGGAGGCTTCCTTCTGGATTTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATACGACGAGACCGTTATCCATCATCTATATCGCCAGTTAATTAGTTCTGGCATCAGTTATGGTGCACAACAGTGGCTTGCTACCCTCCAAAGACAATGCGACTGTTTAGCAGTTCTTATGTCTTCTACTAACTTTACTGAAGATTCAGCAGCAATAGCACCATGCGGGAGGAGAAGTATGCTGAAACTATCGCAGCGCATGGTCGATAACTTCTGTTCTGGGGTTTGTGCTTCAACTTTAAACAAGTGGGACAAGCTTATTGTTGGCAATATAAGCGAGGATGTAAAGGTGATGGCTAGAAAGAGCATCGATGATCCTGGTGAGCCACCGGGGATCGTCTTGAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACAACAGAAAATGTTCGCATTCTTGAAAGATGAGCGCTTAAGGAGCGAGTGGGACATTTTGTCCAATGGCAGGCCAATGCTAGAGATGCTCCACATCTCGAAGGGCCACGAAGTGGATAACCGTGTTTCCCTCCTTCATGCTAATCCCATGAATGCTAATGAGAACACCATGCTTATATTGCAAGAGACTTGGACCGATGCATCAGGCTCACTTGTCGTGTATGCCCCAGTCGACATGGCCTCAGTAAATTTGGTGATGCGCGGGGGAGATTCTGCTTGCGTATCTCTATTACCATCAGGATTTGCAATTCTCCCAGATAGTTCATCCAGCTATGCTTGTGCAAACATAAGCGATGAAGGTTCAGTCAAGGCTGACATTAATAGTGGTGGATGCCTGCTCACGGTTGCATTTCAGATTCTGGTGAACAGCCTTCCTACAGCCAAACTCACCGTTGAATCAGTTGAGACCGTCAACAATCTCATTTCTTGCACAATCCAAAAGATCAAAACGGCCCTCCGAGCATCATGA 2340 45.04 MPSGAITDPSFLSYQIPNSISSASDLSSIRKMDGYGDSFDPNVVVRMREDEYDSRSGSDNIDGGISGDDQDAIDEQPPRKKKYHRHTPHQIQELETLFKECPHPDDKQRNELSRRLGLEAKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSMMKNAITNPICNACGGPSIPVHVSFEEHQLRIENARLRDELLHSYTITNKFLGWPVLPVVNHGSMQSFDSDLELSVGRNGMGCLSTVSDPIPMGLNLGDGLFSAAPVMPIVKPEIDMPCSDVPLERTILVDLALAAMDELVKMAQMDSPMWIKSRDGVEREVLNVEEYTRTFPSCIGAKHNRWTREATRDTSTVIINSLALVETLMDVNRWTEMFPCLIARATTIDVISSGMGGTRNGALQVMHTELRVLSPLVPVRTLRFLRFCKQHADGIWAVVDVSIDFSQEGSNSQSFFNCRRLPSGFVVQDMPNGFSKVTWVEHTEYDETVIHHLYRQLISSGISYGAQQWLATLQRQCDCLAVLMSSTNFTEDSAAIAPCGRRSMLKLSQRMVDNFCSGVCASTLNKWDKLIVGNISEDVKVMARKSIDDPGEPPGIVLSAATSVWMPVSQQKMFAFLKDERLRSEWDILSNGRPMLEMLHISKGHEVDNRVSLLHANPMNANENTMLILQETWTDASGSLVVYAPVDMASVNLVMRGGDSACVSLLPSGFAILPDSSSSYACANISDEGSVKADINSGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALRAS 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44340270 44344655 + evm.model.ptg000004l.177 HCH11g1204 554671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1204 779 CDD homeodomain 80 137 IPR001356 GO:0003677(InterPro)
HCH11g1204 779 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH11g1204 779 FunFam Homeobox-leucine zipper protein GLABRA 2 289 513 - -
HCH11g1204 779 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 777 IPR042160 -
HCH11g1204 779 ProSiteProfiles START domain profile. 280 517 IPR002913 GO:0008289(InterPro)
HCH11g1204 779 FunFam Homeobox-leucine zipper protein HDG1 66 153 - -
HCH11g1204 779 Gene3D - 67 154 - -
HCH11g1204 779 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677(InterPro)
HCH11g1204 779 SUPERFAMILY Bet v1-like 542 773 - -
HCH11g1204 779 SUPERFAMILY Bet v1-like 281 514 - -
HCH11g1204 779 SMART START_1 289 514 IPR002913 GO:0008289(InterPro)
HCH11g1204 779 SUPERFAMILY Homeodomain-like 63 137 IPR009057 -
HCH11g1204 779 CDD START_ArGLABRA2_like 286 512 - -
HCH11g1204 779 MobiDBLite consensus disorder prediction 50 88 - -
HCH11g1204 779 Gene3D - 289 512 IPR023393 -
HCH11g1204 779 SMART HOX_1 79 141 IPR001356 GO:0003677(InterPro)
HCH11g1204 779 Pfam Homeodomain 80 135 IPR001356 GO:0003677(InterPro)
HCH11g1204 779 Coils Coil 131 163 - -
HCH11g1204 779 Pfam START domain 290 513 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1204 HCH-Chr11:44340270 HCH7g0229 HCH-Chr7:1529625 8.30E-194 dispersed
HCH11g1204 HCH-Chr11:44340270 HCH13g1161 HCH-Chr13:38075598 8.20E-258 wgd
HCH11g1204 HCH-Chr11:44340270 HCH7g1594 HCH-Chr7:48243759 1.00E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32623 PF01852 START 1.30E-48 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1204 K09338 - csv:101218216 1207.59