Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1206 ATGGGGTTGAACTTAAACCTTAAACCCCGGTTTCTCATCTTCATTCTTTGCATTCTGAGTTCCATTTCCAGCTCCAATGGCATTATTACAAACCAAAATGAGAGAGAAAGTTTGCTTTTTTTCAAAACATCCTTAGAGAATTCTGAATCTCTTTCATGGAACTCTTCACTTCCTCACTGTTCTTGGACTGGTGTCTCTTGCCAACTTGGAAAAGTTACAAAGCTTTCTCTCTCATCTTTCTCTCTCAAAGGGAAAATCTCTTCTTCTCTTTTCAATCTTGTAAGCCTCACAAGTCTTGACCTTTCTTCTAATCTCCTCTATGGTTCAATCCCAGCTCAAATTCCCAATCTTGGGAACTTGAGAAATCTCTCTCTCCATGAAAATCAGTTTTCAGGAAACTTCCCTATTGGCCTCACTGTTTTAACCCAGTTGCAAAATCTCAGATTAGGGTCTAATTTATTCACTGGAAAAATCCCATTTGAGATTGGAAATTTGAAATTCTTACAGATTCTTGACCTTGCCGGAAACATGTTTTCCGGTGAAGTTCCGGCCAGTTTCGGAAATTTGAAAAGGGTTGTATCTTTGGACCTCAGCAATAATTTATTATCAGGTGAACCCTTGTTAACTATTTTCAGCAATCTTGAATCTTTGACTTCTCTTGATATTGCAAATAATTCATTATCTGGTCAAATCCCTCCTGAAATTGGTAACTTGAAAAATATTGGTTATCTTTCTATTGGAATGAACAATTTTTCTGGTGTGTTGCCTTCTGAAATTGGTGAGCTGTCAAAGTTGGAGATTTTTCTTTCTCCTTTTGGTTCATTAACTGGCCCATTGCCTGACGAATTATCAAAGTTGAAGGCTTTGATTCAGTTGGATCTTTCCCATAATCCACTAGGGTGTTCTATTCCAATTTCAATAGGGGAATTGAAGAATTTGAGTATATTGAATTTAGCTTATGCACAACTTAATGGTTCAATTCCAGCTGAATTGGGAAAGTGTAGGAGTTTGAAATCTTTGATGCTTTTGTTCAATAATCTTTCTGGGGTATTGCCTGAAGAGCTTTCTGAACTTCCCATGTTTACATTCTCTGCGGGAAGAAACGGGTTTTATGGGCCATTGCCATCTTGGCTCGGCAAATGGAATCGTGTCGAAACCATTTCTCTCATTGGCAATGGGTTTACTGGGGAAATCCCACCTGAGATTGGGAATTGCTCCATGCTTAAGGTGCTTATGTTGGCTGAGAACTCGCTGACGGGTCCTATACCTAAGGAACTATGTAATGCAGTATCCTTGACAGGGATTGATCTGGACCATAACTTCCTTTCGGGTACGATTGACGACACGTTTGTGAAGTGTGGAAATCTTTCTCAGCTGGTTTTGGAGAGCAATCAGATTGTTGGTAAGATACCGGAGTACTTCTCTGAACTTCCCCTTTCGGTAATCAACCTCGACTCTAATAACTTTACCGGTTCTATACCTAGTACCATATGGAACTCAGTAGATTTGATGGAATTTTCTGCTGCTGATAACCAGTTGGAGGGTGATCTCCCCTTAGAAATTGGTAATGCAGCTTCACTGCAAAGGCTTGTTCTCAGCAACAATAGTTTGACAGGCACAATACCAGATACGATTGGGAATGTCACAGCTCTTTCTGTTCTGAACTTGAATTCAAATCTCCTTGAAGGAACTATTCCAGTCACGCTTGGAGATTGTGCTGCACTTACGACATTGGACCTTGGAAACAACAGTCTAAACGGGTCGATTCCAGAGACACTTGCTGAGCTTCCTGCATTGCAATGCCTGGTTCTTTCTCACAATAAGTTATCTGGAACAATACCTTCCAGGCCTTCTGCTTATTTTCATCAGGCGACCATTCCTGATTTGGCCTTCGTTCAGCATCTTGGAGTTTTCGATCTGTCTTATAACAGATTGTCTGGTACTATACCAGATGAACTGGGAAAATGTGTTGTGATTGTAAATCTTCTATTGAACAATAATCTGCTTTCAGGAGAAATTCCTAGATCTCTATCTCGCATTACAAACCTTACAATTTTGGATTTGTCTGAGAATATGCTTACTGGTCCCATTCCTTCAGAGATTGGGGATGTTCTTAAGCTTCAAGGCCTATATCTTGAAAACAATCACCTCACGGAAACCATCCCCGAAAGCTTGAGTCTTCTAAGTGGCCTAGTAAAGTTGAACTTAACCGGCAATAAATTATCCGGTTCAATTCCGAAAAGTTTCGGTGACCTAAAGGCGTTAACTCATTTAGATTTGAGTTCTAATGAGTTGGATGGTGAGCTTCCTTATTCTCTGTCCAGCATGCTGAATCTTGTGGGGCTTTATGTGCAGATGAACAGGCTTTCTGGTGAGCTTCATTTCCCAAATTCCATGACATGGAAGATTCAAAGTTTGAATTTGAGTAACAATAATTTTGGGGGTCAACTCCCAGAGACATTGGGTAAATTGTCATACTTGACAACTTTAGATCTTCATGGAAATGAGTTCATAGGACAGATCCCTTCAAAACTTGGAGATCTTACGGAACTCGAATACTTTGATGTTTCGAAGAACATGCTTTCTGGAGAGATTCCAGAGATAATATGCAGCCTGGACAATTTGAATCACTTAAATTTGGCAGAAAATAGTCTAGAAGGGCCTACTCCCACAAGTGGCGTTTGCCGGAATCTATCTAAAAGTTCACTTGCCGGGAACGAGGACCTTTGTGGGGGAGTCATGGGTTCTGATTGCCGGAGATCTGCATTCTCACATGCTTGGGGGCTTGCTGGGATCACCATTGTAATTGTTCTTATTGTTCTTACCATGGCATTTGCTTTGCACATACGGATTGTTAGAAATCACGGGCATGATGATCCCGAGAAAATGGAGGAACGCAGATTGAACAGTTTTATAGAACCAAATCTCTTTTACTTGAGCAGCAGCAGATCAAAAGAACCTTTAAGCATCAACATCGCCATGTTTGAGCAGCCGCTTTTGAAATTAACGTTAGTCGATATCCTTGAAGCAACCAATAACTTCTGCAAAACAAACATTATTGGAGATGGAGGTTTTGGGACAGTATACAAGGCCACTTTGCCTGATGGAAAAGCCGTTGCTGTCAAGAAGCTAAGTGAGGCGAAAACACAGGGGCACCGAGAATTTACTGCTGAAATGGAAACTCTAGGTAAAGTGAAACACCATAATCTTGTTCCACTGCTTGGCTACTGCTCTCTTGGCAAGGAGAAGCTCCTTGTCTATGAATATATGGTGAATGGTAGCTTGGATCTTTGGCTAAGAAATCGAACCGGGACTCTTGAAGTCCTAAACTGGGAGACGCGCTTCAAAATTGCTGCCGGTGCAGCACGTGGATTGGCATTTCTTCATCATGGATTCATCCCCCACATCATTCACAGGGACATCAAAGCAAGCAATATACTCCTGAATGAAGACTTTGTGCCAAAAGTTGCCGACTTCGGGTTGGCGAGACTGATCAGTGCTTGTGAGACTCATGTCTCAACTGAGATTGCTGGAACCTTTGGTTACATCCCACCTGAGTATGGACAGAGTGGTAGGTCTACTACCCAAGGAGATGTTTATAGCTTTGGTGTGATTCTGCTCGAATTGGTAACCGGGAAGGAGCCAACTGGACCCGACTTTAAAGAGATCGAGGGCGGGAATTTGGTTGGTTGGGTGTTTCAGAAGACTAAGAAGGATCAGGCTGCTGATGTTCTCGACTCGACGATTCTGAATGCGGATTCAAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGCTTGTCTGAAAACCCTGCCAACAGGCCTTCCATGCTTCAGGTATTGAAGCTTCTCAAAGGGATAAAAAAGGAGTAA 3879 41.63 MGLNLNLKPRFLIFILCILSSISSSNGIITNQNERESLLFFKTSLENSESLSWNSSLPHCSWTGVSCQLGKVTKLSLSSFSLKGKISSSLFNLVSLTSLDLSSNLLYGSIPAQIPNLGNLRNLSLHENQFSGNFPIGLTVLTQLQNLRLGSNLFTGKIPFEIGNLKFLQILDLAGNMFSGEVPASFGNLKRVVSLDLSNNLLSGEPLLTIFSNLESLTSLDIANNSLSGQIPPEIGNLKNIGYLSIGMNNFSGVLPSEIGELSKLEIFLSPFGSLTGPLPDELSKLKALIQLDLSHNPLGCSIPISIGELKNLSILNLAYAQLNGSIPAELGKCRSLKSLMLLFNNLSGVLPEELSELPMFTFSAGRNGFYGPLPSWLGKWNRVETISLIGNGFTGEIPPEIGNCSMLKVLMLAENSLTGPIPKELCNAVSLTGIDLDHNFLSGTIDDTFVKCGNLSQLVLESNQIVGKIPEYFSELPLSVINLDSNNFTGSIPSTIWNSVDLMEFSAADNQLEGDLPLEIGNAASLQRLVLSNNSLTGTIPDTIGNVTALSVLNLNSNLLEGTIPVTLGDCAALTTLDLGNNSLNGSIPETLAELPALQCLVLSHNKLSGTIPSRPSAYFHQATIPDLAFVQHLGVFDLSYNRLSGTIPDELGKCVVIVNLLLNNNLLSGEIPRSLSRITNLTILDLSENMLTGPIPSEIGDVLKLQGLYLENNHLTETIPESLSLLSGLVKLNLTGNKLSGSIPKSFGDLKALTHLDLSSNELDGELPYSLSSMLNLVGLYVQMNRLSGELHFPNSMTWKIQSLNLSNNNFGGQLPETLGKLSYLTTLDLHGNEFIGQIPSKLGDLTELEYFDVSKNMLSGEIPEIICSLDNLNHLNLAENSLEGPTPTSGVCRNLSKSSLAGNEDLCGGVMGSDCRRSAFSHAWGLAGITIVIVLIVLTMAFALHIRIVRNHGHDDPEKMEERRLNSFIEPNLFYLSSSRSKEPLSINIAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKAVAVKKLSEAKTQGHREFTAEMETLGKVKHHNLVPLLGYCSLGKEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKIAAGAARGLAFLHHGFIPHIIHRDIKASNILLNEDFVPKVADFGLARLISACETHVSTEIAGTFGYIPPEYGQSGRSTTQGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKTKKDQAADVLDSTILNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKLLKGIKKE 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44365952 44369830 + evm.model.ptg000004l.175 HCH11g1206 554673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1206 1292 SMART serkin_6 1014 1286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1206 1292 SUPERFAMILY L domain-like 54 359 - -
HCH11g1206 1292 Gene3D Ribonuclease Inhibitor 140 207 IPR032675 -
HCH11g1206 1292 Pfam Protein tyrosine and serine/threonine kinase 1018 1284 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g1206 1292 SUPERFAMILY L domain-like 625 911 - -
HCH11g1206 1292 ProSiteProfiles Protein kinase domain profile. 1014 1292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1206 1292 FunFam Uncharacterized protein 362 626 - -
HCH11g1206 1292 SMART LRR_typ_2 680 704 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 165 188 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 93 117 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 752 776 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 214 238 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 189 213 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 728 751 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 872 895 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 310 334 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 548 572 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 596 622 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 632 656 IPR003591 -
HCH11g1206 1292 SMART LRR_typ_2 824 848 IPR003591 -
HCH11g1206 1292 Gene3D Phosphorylase Kinase; domain 1 978 1089 - -
HCH11g1206 1292 Gene3D Ribonuclease Inhibitor 33 139 IPR032675 -
HCH11g1206 1292 Gene3D Transferase(Phosphotransferase) domain 1 1090 1292 - -
HCH11g1206 1292 FunFam Leucine-rich repeat receptor-like protein kinase 31 184 - -
HCH11g1206 1292 ProSitePatterns Protein kinases ATP-binding region signature. 1020 1043 IPR017441 GO:0005524(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 803 824 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 682 702 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 289 310 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 851 872 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 479 499 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 635 656 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 599 615 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 827 848 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine Rich Repeat 216 238 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 FunFam leucine-rich repeat receptor protein kinase EMS1 212 361 - -
HCH11g1206 1292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1136 1148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH11g1206 1292 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 628 922 - -
HCH11g1206 1292 FunFam serine/threonine-protein kinase BRI1-like 2 976 1089 - -
HCH11g1206 1292 SMART LRR_sd22_2 189 216 - -
HCH11g1206 1292 SMART LRR_sd22_2 93 119 - -
HCH11g1206 1292 SMART LRR_sd22_2 752 781 - -
HCH11g1206 1292 SMART LRR_sd22_2 848 874 - -
HCH11g1206 1292 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
HCH11g1206 1292 SUPERFAMILY Protein kinase-like (PK-like) 994 1286 IPR011009 -
HCH11g1206 1292 ProSiteProfiles Leucine-rich repeat profile. 706 728 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 656 1291 IPR051564 GO:0016020(PANTHER)
HCH11g1206 1292 CDD STKc_IRAK 1020 1289 - -
HCH11g1206 1292 Pfam Leucine rich repeat 706 765 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515(InterPro)
HCH11g1206 1292 Gene3D Ribonuclease Inhibitor 363 621 IPR032675 -
HCH11g1206 1292 Gene3D Ribonuclease Inhibitor 208 362 IPR032675 -
HCH11g1206 1292 Gene3D Ribonuclease Inhibitor 622 921 IPR032675 -
HCH11g1206 1292 SUPERFAMILY L domain-like 366 615 - -
HCH11g1206 1292 FunFam serine/threonine-protein kinase BRI1-like 2 1090 1292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1206 HCH-Chr11:44365952 HCH14g0183 HCH-Chr14:27506950 1.40E-92 dispersed
HCH3g0714 HCH-Chr3:5121585 HCH11g1206 HCH-Chr11:44365952 2.00E-49 dispersed
HCH8g0930 HCH-Chr8:45616116 HCH11g1206 HCH-Chr11:44365952 3.60E-65 dispersed
HCH8g0954 HCH-Chr8:45731919 HCH11g1206 HCH-Chr11:44365952 1.40E-44 dispersed
HCH9g1118 HCH-Chr9:13972819 HCH11g1206 HCH-Chr11:44365952 3.20E-56 dispersed
HCH11g1206 HCH-Chr11:44365952 HCH6g0671 HCH-Chr6:39742926 9.60E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81081 PF07714 PK_Tyr_Ser-Thr 5.20E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1206 - - - 0.0