Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1235 | ATGCCTTCATGGTGGGGGAAGTCATCATCCAAGGAAGTGAAGAAGAAAACGAGTAAAGAAAGTTTCATTGACACATTACACCGAAAATTTAAGAATTCACCTGAAGGTAAAGTAAGCAGCAGATCAGGAAGTTCTCGTAGACGTTGTGTTGGTGACACTATTTCTGAGAAGGGGTCTAAATCACCAGTCTCAAGATCACCATCACCTTCCAAAAAAGTGTCCAGATGTCAAAGTTTTGCTGAAAGGCCACTCTCTCACCAACTTCCAGTTCCAGATTTACACCCTGCAGGTGTCGGTCGCACAGATTCCGGGATTAGTCTCACAATAAAATCAAAAGACAGAGGCTCTAAAACATCCTCATTTCTGCCCCTTCCAAGACCTGCATGCATACGGAGTAGGCCAGATCCTGCAGATCTAGATGGAGATTTGGCCACTGGTTCAGTCTCTGGTGAATCCTCAAGTGATAGTGAAGATCCTGCTGATTCACATCACCGTAGTCCTCAGGCAACTGACTACGACATTGGGACTAGAACTGCTGTAGGCAGTCCTTCTAGTGCAATTATCAAGGATCGGTCTGCAACTGTTGTGCAAATAAATTTAAGAGAGGACAAGAAAGCAGAAAGCCTTTCATTCCGTCATAAGAATTCATCAAATTTACCTAAACGGAGGCCTTTAAGTAGTAATGTAACGAATCTACAAGTTCCTCGCCACGGAGCTTTCTTTAGTGCTCCAGATAGTTCCATGTCTAGTCCTTCTAGAAGTCCTATGAGAGTATTTAGTACTGAGCAAGTGATGAACACCAATGTTTGGGCTGGAAAGTCTCACCCGGATGTCAATTTAGGTGGATCTGGCCACTGCTCCAGTCCTGGTTCTGGCCACAATTCAGGACACAACTCTATGGGAGGTGATTTGCCGGGCCACTTTTTTTGGCCTCAAAGCAGGGGTAGCCCTGAATATTCTCCGGTACCTAGTTCTAGAATGACTAGCCCTGGCCCTAGCTCCAGAATTCAAAGTGGCGCTGTTACACCCATTCATCCTAGAGCTGGAGCTACGCCAGCTGAGTCACCAACGTGCTGGTCTGATGAGAAACAAAGTCATCGATTGCCACTTCCTCCCATAGCAATCTCAAATTGCTCTCCTTTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCTGTGCCAAGAAGTCCAGGAAGGGCAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTGCTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCAAAACAATTAATGCAGGAAATAGCGCTATTGAGTCGTTTACGGCATCCGAACATTGTGCAGTATTATGGTTCTGAAACAGTGGGTGACAAACTCTATATATACCTGGAGTACGTATCTGGTGGCTCCATTTATAAACTCCTACAAGAATATGGACAATTTGGGGAACTAGCCATTCGTAGTTATACACAACAAATACTATCAGGGCTTGCATATTTACATGCTAAAACTACAGTCCACAGGGATATTAAAGGAGCAAATATACTTGTTGACCCAAATGGTCGTGTTAAGTTGGCAGACTTTGGGATGGCAAAGCATATCACAGGTCAGTCGTGTCCACTGTCATTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCTAATGGTTGCAACCTTGCCGTTGATATTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCGTTAATTCCAGACCACCTCTCAGATGTTGGGAAGGATTTTGTAAGACAATGTCTGCAACGAAATCCACTTCATCGACTTACTGCTGCCCAACTTTTGGATCATCCTTTTGTAAAATATGCTGCACCTATAGAAAGGCCTATTTTGAGCTCTGAACCGTCTGATGCAACAACGCCCGCAGTTACAAGTGGAGTGAAAACTTTGGGTATTGGTCAATTGCGGAATCTTGCTTATGTGGACTCGGAGAGACTTGCAGTCCATTCTTCGAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAACTCAATATACCCAGAAACATATCATGTCCCGTTTCACCGATTGGAAGCCCCCTTTTGCACGCACGGTCACCTCAACATCCAAGTGGAAGAATGTCTCCTTCACCTATATCTAGCCCAAGAACCACTTCAGGCTCGTCTACACCTCTGACAGGATGTAGTGGTGCAATTCCATACAACCACTGGAAACAATCTATATACTTGCAAGAGGGGTTTGGAAGCATGCCGAAATCCTTAAACAGTCCATACAGCAGTGGCCTTTCCTTTCACGATTCAAATCCTGATATTTTTCGGGGATTGCAGCCTGGGGCTCACCTATTCTCTGAACAGATACCCGAAAATGATATCCTGGGAAAGCATGTTGGAAGGCCTGCTTATGGCGAATCGTACGATGGACAGTTGGTCTTGGCTGATCGTGTGTCTCGACAGCTCCTGAGGGATCAGGTTAAAACGCACCCATCTCTGGATTTAAGTCCAAGCTCTACATTGTCTAGCCGTATGAATGGTGTCTAA | 2694 | 45.14 | MPSWWGKSSSKEVKKKTSKESFIDTLHRKFKNSPEGKVSSRSGSSRRRCVGDTISEKGSKSPVSRSPSPSKKVSRCQSFAERPLSHQLPVPDLHPAGVGRTDSGISLTIKSKDRGSKTSSFLPLPRPACIRSRPDPADLDGDLATGSVSGESSSDSEDPADSHHRSPQATDYDIGTRTAVGSPSSAIIKDRSATVVQINLREDKKAESLSFRHKNSSNLPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTNVWAGKSHPDVNLGGSGHCSSPGSGHNSGHNSMGGDLPGHFFWPQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGATPAESPTCWSDEKQSHRLPLPPIAISNCSPFSHSNSAVTSPSVPRSPGRAETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPLIPDHLSDVGKDFVRQCLQRNPLHRLTAAQLLDHPFVKYAAPIERPILSSEPSDATTPAVTSGVKTLGIGQLRNLAYVDSERLAVHSSRVSKAVLHASELNIPRNISCPVSPIGSPLLHARSPQHPSGRMSPSPISSPRTTSGSSTPLTGCSGAIPYNHWKQSIYLQEGFGSMPKSLNSPYSSGLSFHDSNPDIFRGLQPGAHLFSEQIPENDILGKHVGRPAYGESYDGQLVLADRVSRQLLRDQVKTHPSLDLSPSSTLSSRMNGV | 897 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44550570 | 44555243 | - | evm.model.ptg000004l.146 | HCH11g1235 | 554702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1235 | 897 | CDD | STKc_MEKK1_plant | 409 | 666 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 206 | 226 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 284 | 298 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 384 | 412 | - | - | |
HCH11g1235 | 897 | FunFam | Mitogen-activated protein kinase kinase kinase | 408 | 691 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 874 | 897 | - | - | |
HCH11g1235 | 897 | ProSitePatterns | Protein kinases ATP-binding region signature. | 416 | 439 | IPR017441 | GO:0005524(InterPro) | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 9 | 35 | - | - | |
HCH11g1235 | 897 | Pfam | Protein kinase domain | 411 | 666 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g1235 | 897 | SMART | serkin_6 | 410 | 666 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 755 | 777 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 171 | 185 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 280 | 364 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 57 | 75 | - | - | |
HCH11g1235 | 897 | ProSiteProfiles | Protein kinase domain profile. | 410 | 666 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH11g1235 | 897 | SUPERFAMILY | Protein kinase-like (PK-like) | 408 | 751 | IPR011009 | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 880 | 897 | - | - | |
HCH11g1235 | 897 | Gene3D | Transferase(Phosphotransferase) domain 1 | 408 | 688 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 1 | 185 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 104 | 118 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 317 | 340 | - | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 746 | 777 | - | - | |
HCH11g1235 | 897 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 48 | 669 | IPR050538 | - | |
HCH11g1235 | 897 | MobiDBLite | consensus disorder prediction | 212 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1235 | HCH-Chr11:44550570 | HCH14g0125 | HCH-Chr14:22616578 | 4.70E-116 | dispersed | |
HCH11g1235 | HCH-Chr11:44550570 | HCH5g0821 | HCH-Chr5:6454165 | 0.00E+00 | wgd | |
HCH11g1235 | HCH-Chr11:44550570 | HCH6g1181 | HCH-Chr6:46251093 | 6.70E-30 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81083 | PF00069 | Pkinase | 2.50E-70 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1235 | K20717 | - | csv:101214961 | 1422.14 |