Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1235 ATGCCTTCATGGTGGGGGAAGTCATCATCCAAGGAAGTGAAGAAGAAAACGAGTAAAGAAAGTTTCATTGACACATTACACCGAAAATTTAAGAATTCACCTGAAGGTAAAGTAAGCAGCAGATCAGGAAGTTCTCGTAGACGTTGTGTTGGTGACACTATTTCTGAGAAGGGGTCTAAATCACCAGTCTCAAGATCACCATCACCTTCCAAAAAAGTGTCCAGATGTCAAAGTTTTGCTGAAAGGCCACTCTCTCACCAACTTCCAGTTCCAGATTTACACCCTGCAGGTGTCGGTCGCACAGATTCCGGGATTAGTCTCACAATAAAATCAAAAGACAGAGGCTCTAAAACATCCTCATTTCTGCCCCTTCCAAGACCTGCATGCATACGGAGTAGGCCAGATCCTGCAGATCTAGATGGAGATTTGGCCACTGGTTCAGTCTCTGGTGAATCCTCAAGTGATAGTGAAGATCCTGCTGATTCACATCACCGTAGTCCTCAGGCAACTGACTACGACATTGGGACTAGAACTGCTGTAGGCAGTCCTTCTAGTGCAATTATCAAGGATCGGTCTGCAACTGTTGTGCAAATAAATTTAAGAGAGGACAAGAAAGCAGAAAGCCTTTCATTCCGTCATAAGAATTCATCAAATTTACCTAAACGGAGGCCTTTAAGTAGTAATGTAACGAATCTACAAGTTCCTCGCCACGGAGCTTTCTTTAGTGCTCCAGATAGTTCCATGTCTAGTCCTTCTAGAAGTCCTATGAGAGTATTTAGTACTGAGCAAGTGATGAACACCAATGTTTGGGCTGGAAAGTCTCACCCGGATGTCAATTTAGGTGGATCTGGCCACTGCTCCAGTCCTGGTTCTGGCCACAATTCAGGACACAACTCTATGGGAGGTGATTTGCCGGGCCACTTTTTTTGGCCTCAAAGCAGGGGTAGCCCTGAATATTCTCCGGTACCTAGTTCTAGAATGACTAGCCCTGGCCCTAGCTCCAGAATTCAAAGTGGCGCTGTTACACCCATTCATCCTAGAGCTGGAGCTACGCCAGCTGAGTCACCAACGTGCTGGTCTGATGAGAAACAAAGTCATCGATTGCCACTTCCTCCCATAGCAATCTCAAATTGCTCTCCTTTTTCTCATTCAAATTCAGCAGTGACATCTCCTTCTGTGCCAAGAAGTCCAGGAAGGGCAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTGCTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTTACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCAAAACAATTAATGCAGGAAATAGCGCTATTGAGTCGTTTACGGCATCCGAACATTGTGCAGTATTATGGTTCTGAAACAGTGGGTGACAAACTCTATATATACCTGGAGTACGTATCTGGTGGCTCCATTTATAAACTCCTACAAGAATATGGACAATTTGGGGAACTAGCCATTCGTAGTTATACACAACAAATACTATCAGGGCTTGCATATTTACATGCTAAAACTACAGTCCACAGGGATATTAAAGGAGCAAATATACTTGTTGACCCAAATGGTCGTGTTAAGTTGGCAGACTTTGGGATGGCAAAGCATATCACAGGTCAGTCGTGTCCACTGTCATTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCTAATGGTTGCAACCTTGCCGTTGATATTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCGTTAATTCCAGACCACCTCTCAGATGTTGGGAAGGATTTTGTAAGACAATGTCTGCAACGAAATCCACTTCATCGACTTACTGCTGCCCAACTTTTGGATCATCCTTTTGTAAAATATGCTGCACCTATAGAAAGGCCTATTTTGAGCTCTGAACCGTCTGATGCAACAACGCCCGCAGTTACAAGTGGAGTGAAAACTTTGGGTATTGGTCAATTGCGGAATCTTGCTTATGTGGACTCGGAGAGACTTGCAGTCCATTCTTCGAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAACTCAATATACCCAGAAACATATCATGTCCCGTTTCACCGATTGGAAGCCCCCTTTTGCACGCACGGTCACCTCAACATCCAAGTGGAAGAATGTCTCCTTCACCTATATCTAGCCCAAGAACCACTTCAGGCTCGTCTACACCTCTGACAGGATGTAGTGGTGCAATTCCATACAACCACTGGAAACAATCTATATACTTGCAAGAGGGGTTTGGAAGCATGCCGAAATCCTTAAACAGTCCATACAGCAGTGGCCTTTCCTTTCACGATTCAAATCCTGATATTTTTCGGGGATTGCAGCCTGGGGCTCACCTATTCTCTGAACAGATACCCGAAAATGATATCCTGGGAAAGCATGTTGGAAGGCCTGCTTATGGCGAATCGTACGATGGACAGTTGGTCTTGGCTGATCGTGTGTCTCGACAGCTCCTGAGGGATCAGGTTAAAACGCACCCATCTCTGGATTTAAGTCCAAGCTCTACATTGTCTAGCCGTATGAATGGTGTCTAA 2694 45.14 MPSWWGKSSSKEVKKKTSKESFIDTLHRKFKNSPEGKVSSRSGSSRRRCVGDTISEKGSKSPVSRSPSPSKKVSRCQSFAERPLSHQLPVPDLHPAGVGRTDSGISLTIKSKDRGSKTSSFLPLPRPACIRSRPDPADLDGDLATGSVSGESSSDSEDPADSHHRSPQATDYDIGTRTAVGSPSSAIIKDRSATVVQINLREDKKAESLSFRHKNSSNLPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTNVWAGKSHPDVNLGGSGHCSSPGSGHNSGHNSMGGDLPGHFFWPQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGATPAESPTCWSDEKQSHRLPLPPIAISNCSPFSHSNSAVTSPSVPRSPGRAETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPLIPDHLSDVGKDFVRQCLQRNPLHRLTAAQLLDHPFVKYAAPIERPILSSEPSDATTPAVTSGVKTLGIGQLRNLAYVDSERLAVHSSRVSKAVLHASELNIPRNISCPVSPIGSPLLHARSPQHPSGRMSPSPISSPRTTSGSSTPLTGCSGAIPYNHWKQSIYLQEGFGSMPKSLNSPYSSGLSFHDSNPDIFRGLQPGAHLFSEQIPENDILGKHVGRPAYGESYDGQLVLADRVSRQLLRDQVKTHPSLDLSPSSTLSSRMNGV 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44550570 44555243 - evm.model.ptg000004l.146 HCH11g1235 554702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1235 897 CDD STKc_MEKK1_plant 409 666 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 206 226 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 284 298 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 156 170 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 384 412 - -
HCH11g1235 897 FunFam Mitogen-activated protein kinase kinase kinase 408 691 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 874 897 - -
HCH11g1235 897 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
HCH11g1235 897 MobiDBLite consensus disorder prediction 9 35 - -
HCH11g1235 897 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1235 897 SMART serkin_6 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1235 897 MobiDBLite consensus disorder prediction 755 777 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 171 185 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 280 364 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 57 75 - -
HCH11g1235 897 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1235 897 SUPERFAMILY Protein kinase-like (PK-like) 408 751 IPR011009 -
HCH11g1235 897 MobiDBLite consensus disorder prediction 880 897 - -
HCH11g1235 897 Gene3D Transferase(Phosphotransferase) domain 1 408 688 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 1 185 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 104 118 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 317 340 - -
HCH11g1235 897 MobiDBLite consensus disorder prediction 746 777 - -
HCH11g1235 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 48 669 IPR050538 -
HCH11g1235 897 MobiDBLite consensus disorder prediction 212 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1235 HCH-Chr11:44550570 HCH14g0125 HCH-Chr14:22616578 4.70E-116 dispersed
HCH11g1235 HCH-Chr11:44550570 HCH5g0821 HCH-Chr5:6454165 0.00E+00 wgd
HCH11g1235 HCH-Chr11:44550570 HCH6g1181 HCH-Chr6:46251093 6.70E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81083 PF00069 Pkinase 2.50E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1235 K20717 - csv:101214961 1422.14