Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1252 ATGGCGGCCGGTCTCTCCGCCGCCTTATCTCCCAAACCCTTCCATCTCTTCCTTACTACTTCCAGTCTCTCCCTTAAACCACGAACCCCATTTCTTCTCCCTCCTTCACCTTTCTCTAACCCTAAAACCCAATGGAAAACGCGAGGCAGAACCAAAACGCTCTTCACCGTCTGTGTCCTCGTCGACGATCAAACCAATTTCTCCGACGATGAATCTCCGGTTGTAGTACCCCAGATCCCGTCTCCTCGCGTCGCTGAAAAACTCGCCAGGAAGAAATCGGAGCGATTCACTTACCTCATCGCCGCCGTCATGTCTTCCTTCGGAATTACTTCCATGGCTGTCATGGCTGTTTATTACCGATTTTACTGGCAAATGGAGGGTGGAGAGATTCCTTTATCTGAAATGTTTGGTACATTTGCTCTATCTGTGGGAGCTGCTGTGGGAATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCACGCTTCCTTATGGCATATGCATGAGTCGCATCATAAACCGAGGGACGGTCCATTCGAACTTAACGACGTTTTCGCCATTACTAACGCCGTTCCAGCCATTGCTCTTCTCTCTTACGGCTTCTTCCATAAGGGCCTCGTTCCCGGCCTCTGCTTCGGCGCTGGCCTTGGGATTACGGTTTTTGGAATGGCGTACATGTTCGTCCACGACGGTTTGGTTCATAAAAGATTCCCTGTGGGTCCCATTGCAGATGTCCCCTACTTCCGAAGGGTTGCTGCTGCTCACAAGCTCCACCACTCAGACAAGTTCAACGGTGTCCCATATGGGCTGTTTTTGGGTCCTAAGGAATTAGAGGAAGTGGGAGGTCTAGAAGAATTGGAGAAGGAAATCGACAGAAGAAAAAAATCAACGGTGGCTACAAAATCAATCAACGGTTCATGA 924 49.68 MAAGLSAALSPKPFHLFLTTSSLSLKPRTPFLLPPSPFSNPKTQWKTRGRTKTLFTVCVLVDDQTNFSDDESPVVVPQIPSPRVAEKLARKKSERFTYLIAAVMSSFGITSMAVMAVYYRFYWQMEGGEIPLSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHKPRDGPFELNDVFAITNAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHKLHHSDKFNGVPYGLFLGPKELEEVGGLEELEKEIDRRKKSTVATKSINGS 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44678204 44680137 - evm.model.ptg000004l.129 HCH11g1252 554719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1252 307 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 297 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
HCH11g1252 307 Pfam Fatty acid hydroxylase 145 273 IPR006694 GO:0005506(InterPro)|GO:0008610(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1252 HCH-Chr11:44678204 HCH5g0538 HCH-Chr5:3697151 4.30E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1252 K15746 - csv:101212140 496.123