Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1282 ATGATCAAGAGGAGGGAAATCTTCCTTTTCCTGGAAATTCTCTTGTTATCAGCAATCGTTAGGCCGGTTTTCACTGAGCCAGTTGAAGATAAGCAAGCTTTGCTTGATTTTTTTCGCAATATCTCACACTCTCACTCTCTCAATTGGAATGAGAGCAGTTCAGTGTGTAAAACTTGGACAGGAGTGTTTTGTAACAATGATCAGTCTAGAGTAGTTGCCTTACGATTACCGGGAACTGGGTTGCGTGGCCCGATTCCCGCAAACACTCTTAGCCGCCTCTCTGCGCTTGAGACTCTAAGTCTCAGATTGAATGGGATATCAGGACCTTTTCCTTCTGATTTTTCCAAGCTAGGAAACTTGAGCTCACTATTCCTGCAATTTAACAAGTTTTCTGGCCCTTTGCCTTTAGACTTGTCTGTTTGGAAGAACCTTAGTGACCTCGATTTATCGAACAATTTCTTTAATGGGAGTGTTCCATCTTCAATCTCAAAGTTGAGTCACCTGACTGTTTTGAATCTTGCTAATAACTCGTTTTCGGGCAAGATTCCGGACCTTGATCTTCCGAGTTTGCAACGGTTGGATTTGTCCAATAATAATCTTACTGGAAATGTGCCACAATCTCTTAAAAGATTTCCTAGGTCGGCATTCTCTGGTAACGATCTTACCGAAGATAATTCTGCACTTCCTCCAGCTTTTCCACTCCAGCCACCTAATGCTCAAGCTCAACCAACAAGAAAAGGCAAAAAACTTGGTGAATCTGCAATACTGGGTATTGCAATTGGGGGTTGTGTTTTTGGGATTGTTATAATAGCTGTTTTGATGACTGCTTGCTGGTTGAAAAGAGGAAAAGAAAACATAACTTCCACCAAGGAGCCAAAGAAGAAGGAAACCTCAGTAAAGAAAAGGGAATCCGAGAGCCGAGAGCATAATAGCAGCCTCAATTTCTTTCCGGCTTCAAATCTTGCGTTTGACTTGGAAGACCTGTTGAGGGCATCTGCAGAGGTTCTTGGTAAGGGAACCTTTGGAGTGAGCTATAAGGCAGCTCTGGAGGACACAACGACGGTTGTCGTGAAGAGGTTGAATCAAGTGTCGGTTGGAAAACGAGAATTTGAACAGCAGATGGAGTTGATTGGGAATATTAAACATGAGAATGTTGTTTCTTTAAGGGCATACTATTATTCAAAGGATGAGAAGCTTATGGTGTATGACTACTATGGACAGGGGAGTGTGTCTGCAATGTTACACAATAAACAAGGAGAAGATCAGCGAGTATTAGATTGGGAAACTCGAATGAAAATTGCTATTGGAGCAGCAAGAGGCCTTGCTCATATTCATGCAGAAAATGGAGGGAAAGTTTGCCATGGAAACATCAAAGCCTCGAACGTTTTTCTCAACTCTAAAGGATACGGTTGTGTCTCCGACATTGGTTTGGCGACATTGATGAATTCAATTCCTCAACCAGTGACAAGAACACCTGGTTACCGAGCCCCCGAAGTGACCGACTCTCGGAGAGCATCAGAAGCAGCTGATGTCTACAGTTTTGGGGTGTTGTTGCTGGAGCTTCTGACCGGAAAATCCCCCATACACGTTGAAGGTAGTAACGAAGTCATGAATTTGGTGAGGTGGGTGAATTCCGTGGTGAGGGAGGAGTGGACAGCAGAAGTGTTTGATGTGGTACTTCTAAGGTATCCAAATATAGAAGAAGAAATGGTGGAGATGTTACAAATTGGACTGTCTTGTGTTGCCAAAATGCCAGAGCAGAGACCAAAGTTGATGGATATAGTGTCAAGGATAGAGCAAGTTCGTCAGGTTGGTAGCGGTAACCGACCATCATCGGAGTCGAAATCGGAGTATTCGACACCAACTCGTATTACTGAAGTTGGTTCTTCCTCATCTCCACATTAA 1905 43.36 MIKRREIFLFLEILLLSAIVRPVFTEPVEDKQALLDFFRNISHSHSLNWNESSSVCKTWTGVFCNNDQSRVVALRLPGTGLRGPIPANTLSRLSALETLSLRLNGISGPFPSDFSKLGNLSSLFLQFNKFSGPLPLDLSVWKNLSDLDLSNNFFNGSVPSSISKLSHLTVLNLANNSFSGKIPDLDLPSLQRLDLSNNNLTGNVPQSLKRFPRSAFSGNDLTEDNSALPPAFPLQPPNAQAQPTRKGKKLGESAILGIAIGGCVFGIVIIAVLMTACWLKRGKENITSTKEPKKKETSVKKRESESREHNSSLNFFPASNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDTTTVVVKRLNQVSVGKREFEQQMELIGNIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHNKQGEDQRVLDWETRMKIAIGAARGLAHIHAENGGKVCHGNIKASNVFLNSKGYGCVSDIGLATLMNSIPQPVTRTPGYRAPEVTDSRRASEAADVYSFGVLLLELLTGKSPIHVEGSNEVMNLVRWVNSVVREEWTAEVFDVVLLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKLMDIVSRIEQVRQVGSGNRPSSESKSEYSTPTRITEVGSSSSPH 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44872426 44874869 + evm.model.ptg000004l.99 HCH11g1282 554749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1282 634 Pfam Leucine Rich Repeat 96 117 IPR001611 GO:0005515(InterPro)
HCH11g1282 634 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
HCH11g1282 634 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
HCH11g1282 634 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
HCH11g1282 634 Gene3D Transferase(Phosphotransferase) domain 1 406 620 - -
HCH11g1282 634 Gene3D Phosphorylase Kinase; domain 1 294 404 - -
HCH11g1282 634 MobiDBLite consensus disorder prediction 289 311 - -
HCH11g1282 634 FunFam Probable inactive receptor kinase RLK902 27 186 - -
HCH11g1282 634 ProSiteProfiles Protein kinase domain profile. 330 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1282 634 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
HCH11g1282 634 SUPERFAMILY L domain-like 40 211 - -
HCH11g1282 634 MobiDBLite consensus disorder prediction 219 246 - -
HCH11g1282 634 PANTHER OS05G0588300 PROTEIN 9 613 IPR050994 -
HCH11g1282 634 FunFam pollen receptor-like kinase 1 299 404 - -
HCH11g1282 634 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
HCH11g1282 634 PRINTS Leucine-rich repeat signature 144 157 - -
HCH11g1282 634 PRINTS Leucine-rich repeat signature 187 200 - -
HCH11g1282 634 MobiDBLite consensus disorder prediction 289 309 - -
HCH11g1282 634 SUPERFAMILY Protein kinase-like (PK-like) 333 598 IPR011009 -
HCH11g1282 634 Gene3D Ribonuclease Inhibitor 140 228 IPR032675 -
HCH11g1282 634 Pfam Protein kinase domain 334 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH11g1282 634 MobiDBLite consensus disorder prediction 603 634 - -
HCH11g1282 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 405 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1282 HCH-Chr11:44872426 HCH9g0846 HCH-Chr9:5984425 4.20E-119 dispersed
HCH11g1282 HCH-Chr11:44872426 HCH5g0854 HCH-Chr5:6927688 3.90E-181 wgd
HCH11g1282 HCH-Chr11:44872426 HCH5g0563 HCH-Chr5:3886949 1.60E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81087 PF00069 Pkinase 3.60E-37 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1282 - - - 0.0