Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1300 ATGATTTTAACCGAACCAAATCAAACCAAACCAAACCAAACCAAACCGAGAATTTCAGTTATTGAGATTTCGAGAACAGTTACCATTCCTGTGAAATTTTGTTTTTTGTTGAGATCTTGCACTATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACATGTAGGGATATTCAACGGACGGATCCGAATCACCGATATTTGGAGGAGTTTGCCGGCCAATTTGGGACTTGCTTACACCTGGAAGCGTGAATACAGAACAAGTCTCATGATGATGGTAGATACGGGTTCTTCGGAAAATCGTGTGCCGGTTGTTGATAAGCATCCTGAGAAGGATGAAGATGGTGGTTATGCTACCGGAGGATGGAAAAGTGAGGATGGGAAACTTAGTTGGGGTTATTCAAGTTTCAGAGGAAAGAGAGCAACCATGGAAGATTTCTTTGATATTAAAATGTCAAAGATTGATGGTCAAACAGTCTGCCTTTTTGGCATTTTTGATGGTCACGGTGGATCTCGGGCTGCTGAGTATTTGAAGGAGCGTCTCTTTGATAATCTCCTGAAGCACCCAAAATTTCTGGTGGAAACCAGATTAGCTATCAGTGAAACATACCAAAAGACTGATGCAGAATTTTTGGATTCAGAAAAAGATACTTTTCGGGATGATGGTTCTACGGCTTCAACAGCTGTGATAGTTGGTAATCATCTCTATGTTGCCAACGTCGGAGATTCACGTGCTATAATATCGAAGGGTGGTGAAGCAATCCCTCTTTCTGAGGATCACAAACCAAATAGACCCGATGAGCGGAAGAGAATTGAAGATGCAGGGGGTATTGTGATGTGGGCTGGCACTTGGAGGGTAGGAGGCGTGTTAGCGATGTCTCGCGCTTTCGGTAATAGGATGCTGAAGCAGTTTGTTATTGCAGATCCAGAGATACAGGATCTAGAAATAGACAAGGATATCGAGTTACTTGTTCTTGCAACTGATGGAATTTGGGACGTGATACGCAATGAGGATGCAGTATCAATTGCTGAGAATGAAGAAGAATCCGAGGCAGCCGCTAGGAAGCTAACGGAAGCGGCTTTTACCCGTGGTAGTGCTGACAATATAACATGCATTGTAGTGAAGTTCCATCACGACAAAGAAGGAGGTCCAGCCAATACTCAAAATGACTAA 1182 43.15 MILTEPNQTKPNQTKPRISVIEISRTVTIPVKFCFLLRSCTMVCSYNIRNVIAQAGHVGIFNGRIRITDIWRSLPANLGLAYTWKREYRTSLMMMVDTGSSENRVPVVDKHPEKDEDGGYATGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKIDGQTVCLFGIFDGHGGSRAAEYLKERLFDNLLKHPKFLVETRLAISETYQKTDAEFLDSEKDTFRDDGSTASTAVIVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRPDERKRIEDAGGIVMWAGTWRVGGVLAMSRAFGNRMLKQFVIADPEIQDLEIDKDIELLVLATDGIWDVIRNEDAVSIAENEEESEAAARKLTEAAFTRGSADNITCIVVKFHHDKEGGPANTQND 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44995154 44999123 - evm.model.ptg000004l.81 HCH11g1300 554767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1300 393 SMART PP2C_4 123 377 IPR001932 -
HCH11g1300 393 Pfam Protein phosphatase 2C 137 372 IPR001932 -
HCH11g1300 393 Gene3D - 125 385 IPR036457 -
HCH11g1300 393 ProSitePatterns PPM-type phosphatase domain signature. 164 172 IPR000222 GO:0043169(InterPro)
HCH11g1300 393 ProSiteProfiles PPM-type phosphatase domain profile. 133 379 IPR001932 -
HCH11g1300 393 FunFam Probable protein phosphatase 2C 76 125 385 - -
HCH11g1300 393 CDD PP2Cc 135 379 IPR001932 -
HCH11g1300 393 PANTHER PROTEIN PHOSPHATASE 117 378 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH11g1300 393 SUPERFAMILY PP2C-like 130 380 IPR036457 -
HCH11g1300 393 SMART PP2C_SIG_2 145 379 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1300 HCH-Chr11:44995154 HCH12g0442 HCH-Chr12:2557650 2.70E-92 dispersed
HCH11g1300 HCH-Chr11:44995154 HCH11g1305 HCH-Chr11:45052792 6.10E-36 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1300 K17506 - csv:101203681 614.379