Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1305 ATGCGTGATCACAAGATGACTAAAGTTAAGAATAATGCTCGCCGGAGGAGAAAACTGAGAGTTCGTAAACTGAGATACTCATGCCAGTGGAAGATTCATGCCGCCAAATTTAACGGCGGTAAACTCGGCGGAGTTGACGAAGCGAACTCAGAGAATGGAGGAAGTGAATCTTCCTCGGCTGGAGAAAGCAATACAATGATCATCGAACTCGGAGTTTCATCGGGTTCAGTAGAGGGAGAGAGAGAGGGAGGAGAAGCTAGGGTTTCCGTTTCCGATATTGTTCCGTACAGTGAGATTTCGGTCATCGGCCGGAGGAGAGAGATGGAAGATGAAGTGAGAGTGAAATTAGGATTAACGACGATTAATAAAACGAAGTATGATTTCTTCGCCGTGTACGACGGTCACGGGGGAGCTCAGGTGGCGGAGGTTTGCCGGAAACGGTTGCACGAGATAGTGGCGGAGGAGATTTCAGAGAGGGGAGAGAGGGAGGAGGATGTGGTGGAGTGGGAGAGATTGATGGAGAAGAGTTTTGAGAGAATGGATGAGGAAGTAAACGACGGTGATGCGGCCATGAAGACGGTGGGGACGACTGTGGTTGCGGCGGTGATCGGGTTGAAGGAGGTGGTGGTGGCGAATTGTGGAGATTGTAGAGCTGTTTTGGGTAGGGATGGAGTTGCATTGGCTCTATCAAATGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAACTGGAATGGCTACCGAGTGCTTGGAGTTCTTGCCACTTCGAGATCGATCGGTGATGAATATCTTAAACCATTTGTTATCTCCAAACCGGAAGTTACAGTGACTAAGCGTACCAACAATGATGAGTTCCTCATACTAGGAAGTGATGGCCTGTGGGACGTTGTTTCAAATGAGACTGCGTGCAACGTAGTGAGGAGATGTTTTGGAGGCAACATGAAGCGGATTTCGTTGAAGACTGCAAACAGCAGCTATGTTGCTGAAGCTGCAGCGGTGTTAGCAGAGCTAGCCGTGGCTAGGGGAAGCAAGGATAACATTAGTGTGATAGTAATAGATCTGAGGAAGCCAACCAGTTCTCCTCCTTAA 1119 48.61 MRDHKMTKVKNNARRRRKLRVRKLRYSCQWKIHAAKFNGGKLGGVDEANSENGGSESSSAGESNTMIIELGVSSGSVEGEREGGEARVSVSDIVPYSEISVIGRRREMEDEVRVKLGLTTINKTKYDFFAVYDGHGGAQVAEVCRKRLHEIVAEEISERGEREEDVVEWERLMEKSFERMDEEVNDGDAAMKTVGTTVVAAVIGLKEVVVANCGDCRAVLGRDGVALALSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTNNDEFLILGSDGLWDVVSNETACNVVRRCFGGNMKRISLKTANSSYVAEAAAVLAELAVARGSKDNISVIVIDLRKPTSSPP 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45052792 45055141 - evm.model.ptg000004l.76 HCH11g1305 554772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1305 372 SUPERFAMILY PP2C-like 94 365 IPR036457 -
HCH11g1305 372 ProSitePatterns PPM-type phosphatase domain signature. 128 136 IPR000222 GO:0043169(InterPro)
HCH11g1305 372 MobiDBLite consensus disorder prediction 43 65 - -
HCH11g1305 372 SMART PP2C_4 80 362 IPR001932 -
HCH11g1305 372 Gene3D - 88 369 IPR036457 -
HCH11g1305 372 ProSiteProfiles PPM-type phosphatase domain profile. 95 364 IPR001932 -
HCH11g1305 372 PANTHER PROTEIN PHOSPHATASE 63 363 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH11g1305 372 CDD PP2Cc 96 364 IPR001932 -
HCH11g1305 372 SMART PP2C_SIG_2 107 364 IPR001932 -
HCH11g1305 372 Pfam Protein phosphatase 2C 101 357 IPR001932 -
HCH11g1305 372 FunFam Protein phosphatase 2C 51 88 371 - -
HCH11g1305 372 MobiDBLite consensus disorder prediction 50 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1305 HCH-Chr11:45052792 HCH13g0506 HCH-Chr13:3551931 1.00E-64 dispersed
HCH11g1300 HCH-Chr11:44995154 HCH11g1305 HCH-Chr11:45052792 6.10E-36 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1305 K14497 - csv:101214188 431.409