Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1305 | ATGCGTGATCACAAGATGACTAAAGTTAAGAATAATGCTCGCCGGAGGAGAAAACTGAGAGTTCGTAAACTGAGATACTCATGCCAGTGGAAGATTCATGCCGCCAAATTTAACGGCGGTAAACTCGGCGGAGTTGACGAAGCGAACTCAGAGAATGGAGGAAGTGAATCTTCCTCGGCTGGAGAAAGCAATACAATGATCATCGAACTCGGAGTTTCATCGGGTTCAGTAGAGGGAGAGAGAGAGGGAGGAGAAGCTAGGGTTTCCGTTTCCGATATTGTTCCGTACAGTGAGATTTCGGTCATCGGCCGGAGGAGAGAGATGGAAGATGAAGTGAGAGTGAAATTAGGATTAACGACGATTAATAAAACGAAGTATGATTTCTTCGCCGTGTACGACGGTCACGGGGGAGCTCAGGTGGCGGAGGTTTGCCGGAAACGGTTGCACGAGATAGTGGCGGAGGAGATTTCAGAGAGGGGAGAGAGGGAGGAGGATGTGGTGGAGTGGGAGAGATTGATGGAGAAGAGTTTTGAGAGAATGGATGAGGAAGTAAACGACGGTGATGCGGCCATGAAGACGGTGGGGACGACTGTGGTTGCGGCGGTGATCGGGTTGAAGGAGGTGGTGGTGGCGAATTGTGGAGATTGTAGAGCTGTTTTGGGTAGGGATGGAGTTGCATTGGCTCTATCAAATGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAACTGGAATGGCTACCGAGTGCTTGGAGTTCTTGCCACTTCGAGATCGATCGGTGATGAATATCTTAAACCATTTGTTATCTCCAAACCGGAAGTTACAGTGACTAAGCGTACCAACAATGATGAGTTCCTCATACTAGGAAGTGATGGCCTGTGGGACGTTGTTTCAAATGAGACTGCGTGCAACGTAGTGAGGAGATGTTTTGGAGGCAACATGAAGCGGATTTCGTTGAAGACTGCAAACAGCAGCTATGTTGCTGAAGCTGCAGCGGTGTTAGCAGAGCTAGCCGTGGCTAGGGGAAGCAAGGATAACATTAGTGTGATAGTAATAGATCTGAGGAAGCCAACCAGTTCTCCTCCTTAA | 1119 | 48.61 | MRDHKMTKVKNNARRRRKLRVRKLRYSCQWKIHAAKFNGGKLGGVDEANSENGGSESSSAGESNTMIIELGVSSGSVEGEREGGEARVSVSDIVPYSEISVIGRRREMEDEVRVKLGLTTINKTKYDFFAVYDGHGGAQVAEVCRKRLHEIVAEEISERGEREEDVVEWERLMEKSFERMDEEVNDGDAAMKTVGTTVVAAVIGLKEVVVANCGDCRAVLGRDGVALALSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTNNDEFLILGSDGLWDVVSNETACNVVRRCFGGNMKRISLKTANSSYVAEAAAVLAELAVARGSKDNISVIVIDLRKPTSSPP | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 45052792 | 45055141 | - | evm.model.ptg000004l.76 | HCH11g1305 | 554772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1305 | 372 | SUPERFAMILY | PP2C-like | 94 | 365 | IPR036457 | - | |
HCH11g1305 | 372 | ProSitePatterns | PPM-type phosphatase domain signature. | 128 | 136 | IPR000222 | GO:0043169(InterPro) | |
HCH11g1305 | 372 | MobiDBLite | consensus disorder prediction | 43 | 65 | - | - | |
HCH11g1305 | 372 | SMART | PP2C_4 | 80 | 362 | IPR001932 | - | |
HCH11g1305 | 372 | Gene3D | - | 88 | 369 | IPR036457 | - | |
HCH11g1305 | 372 | ProSiteProfiles | PPM-type phosphatase domain profile. | 95 | 364 | IPR001932 | - | |
HCH11g1305 | 372 | PANTHER | PROTEIN PHOSPHATASE | 63 | 363 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
HCH11g1305 | 372 | CDD | PP2Cc | 96 | 364 | IPR001932 | - | |
HCH11g1305 | 372 | SMART | PP2C_SIG_2 | 107 | 364 | IPR001932 | - | |
HCH11g1305 | 372 | Pfam | Protein phosphatase 2C | 101 | 357 | IPR001932 | - | |
HCH11g1305 | 372 | FunFam | Protein phosphatase 2C 51 | 88 | 371 | - | - | |
HCH11g1305 | 372 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1305 | HCH-Chr11:45052792 | HCH13g0506 | HCH-Chr13:3551931 | 1.00E-64 | dispersed | |
HCH11g1300 | HCH-Chr11:44995154 | HCH11g1305 | HCH-Chr11:45052792 | 6.10E-36 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1305 | K14497 | - | csv:101214188 | 431.409 |