Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1310 | ATGTCGTCGACGCTGCTAGAGGTGACACGTGCCTCGCACGAGGAAGTAGAACGATTAGAGCGGCTCATCGTGAAAGAGCTTCAAAACGAACCTGCTTCCGGCAAGGAGCGTTTGCTACAAAGTCACAGAGTCCGGAATATGATCGATATCATTACTTCCACTACTGAAAAACTCGTTGAGATTTATGAAGATAAGGATAATGCAAGGAAGGATGAGATCGCAGCCCTTGGAGGGCAAACAGCTTCAGGAACTAACGTTTTTAGTGCATTCTATGATAGATTGAAAGAGATTCGTGAATACCATAGAAGACATCCAGCTGCACGTGTTGTTGATGTCAATGAGGACAATGAGACACTACTCAAAGAGGAACCACAAATTGAATTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCATGAATTGTACAACCAATATATCAATTCTAAATTTGGAGAGCCTATTGAGTACTCAGCTTACCTAGATGTTTTTTCACAACCACAGAAGATTTCCCGCAAACTAAAAATTTCAAGACAATACATGGAATACATGGAGAATCTTCTTGCATATCTTATTTATTTTTTCCAGCGCACAGAGCCATTGCAAGATATTGATCGAATATTCTCAAAGGTTGAAACTGAATTCGAAGAGCAGTGGAATGCTGGCATAGTTGAAGGATGGGAGAACATTGGTCAAGATAATGGCCATGAACCTGCTCAGCATAATGTTATTGATCTTGACTATTATAGCACTGTGGAAGAACTGGTGGATCTTGGTCCTGGAAGATTGAAGGAGGCTTTGGCAGCATTGGGACTGAAGTCAGGTGGTACAGTTCAGCAGCGTGCAGACAGGCTTTTCCTCACTAAGCACACTCCTCTTCAAATGTTGGACAAAAAACACTTTGCTAAAGTTTCTCGCGGACCAATTCAGAATGGGGAAGCTTCAGCTTTCCTGCAAGATGAAAATTTGAAACAAGTCGCTCTGATGGAAGCAAAAATTGAAAAATTGTGCGATTTACTGGATGAGATAATTGTCCGAACCAAAGACAACATTGTTAAGAAGCAAGCTTTAACATATGAGGAGATTGAAGCAGAACGTGAAGAGGAAGAGACACAAGCTGAGTCCGAAAGTGATGATGACGAGCAACAGATTTATAATCCCCTTAAGCTTCCAATGGGTTGGGATGGTAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGTAACTATAGTTACTGGGGCCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAACACAAAGAACTTCAACGAAATCACTTCAATTGAGGAAGCAAAAGAATTGTGGAAGGGAATTCAAGAACGGCAAGGAGTCAACAAGTGGCGACCAGATTTAGACGAAGAATATGAAGATCGAGAGGGTAACATTTACAACAAGAAAACATATACCGATCTCCAACGACAGGGATTGATATAA | 1530 | 41.76 | MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKERLLQSHRVRNMIDIITSTTEKLVEIYEDKDNARKDEIAALGGQTASGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDNETLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSAYLDVFSQPQKISRKLKISRQYMEYMENLLAYLIYFFQRTEPLQDIDRIFSKVETEFEEQWNAGIVEGWENIGQDNGHEPAQHNVIDLDYYSTVEELVDLGPGRLKEALAALGLKSGGTVQQRADRLFLTKHTPLQMLDKKHFAKVSRGPIQNGEASAFLQDENLKQVALMEAKIEKLCDLLDEIIVRTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKGIQERQGVNKWRPDLDEEYEDREGNIYNKKTYTDLQRQGLI | 509 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 45098124 | 45104524 | + | evm.model.ptg000004l.71 | HCH11g1310 | 554777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1310 | 509 | ProSiteProfiles | Zinc finger matrin-type profile. | 414 | 445 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) | |
HCH11g1310 | 509 | MobiDBLite | consensus disorder prediction | 364 | 382 | - | - | |
HCH11g1310 | 509 | MobiDBLite | consensus disorder prediction | 364 | 383 | - | - | |
HCH11g1310 | 509 | Pfam | Splicing factor SF3a60 binding domain | 80 | 105 | IPR021966 | - | |
HCH11g1310 | 509 | Pfam | SF3a60/Prp9 C-terminal | 390 | 509 | IPR024598 | GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro) | |
HCH11g1310 | 509 | Pfam | Replication stress response SDE2 C-terminal | 225 | 304 | IPR025086 | - | |
HCH11g1310 | 509 | Pfam | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 127 | 174 | IPR031774 | - | |
HCH11g1310 | 509 | Coils | Coil | 353 | 380 | - | - | |
HCH11g1310 | 509 | PANTHER | SPLICING FACTOR SF3A-RELATED | 1 | 482 | IPR051421 | GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0160 | HCH-Chr10:1317600 | HCH11g1310 | HCH-Chr11:45098124 | 5.70E-09 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1310 | K12827 | - | csv:101205916 | 901.353 |