Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1310 ATGTCGTCGACGCTGCTAGAGGTGACACGTGCCTCGCACGAGGAAGTAGAACGATTAGAGCGGCTCATCGTGAAAGAGCTTCAAAACGAACCTGCTTCCGGCAAGGAGCGTTTGCTACAAAGTCACAGAGTCCGGAATATGATCGATATCATTACTTCCACTACTGAAAAACTCGTTGAGATTTATGAAGATAAGGATAATGCAAGGAAGGATGAGATCGCAGCCCTTGGAGGGCAAACAGCTTCAGGAACTAACGTTTTTAGTGCATTCTATGATAGATTGAAAGAGATTCGTGAATACCATAGAAGACATCCAGCTGCACGTGTTGTTGATGTCAATGAGGACAATGAGACACTACTCAAAGAGGAACCACAAATTGAATTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCATGAATTGTACAACCAATATATCAATTCTAAATTTGGAGAGCCTATTGAGTACTCAGCTTACCTAGATGTTTTTTCACAACCACAGAAGATTTCCCGCAAACTAAAAATTTCAAGACAATACATGGAATACATGGAGAATCTTCTTGCATATCTTATTTATTTTTTCCAGCGCACAGAGCCATTGCAAGATATTGATCGAATATTCTCAAAGGTTGAAACTGAATTCGAAGAGCAGTGGAATGCTGGCATAGTTGAAGGATGGGAGAACATTGGTCAAGATAATGGCCATGAACCTGCTCAGCATAATGTTATTGATCTTGACTATTATAGCACTGTGGAAGAACTGGTGGATCTTGGTCCTGGAAGATTGAAGGAGGCTTTGGCAGCATTGGGACTGAAGTCAGGTGGTACAGTTCAGCAGCGTGCAGACAGGCTTTTCCTCACTAAGCACACTCCTCTTCAAATGTTGGACAAAAAACACTTTGCTAAAGTTTCTCGCGGACCAATTCAGAATGGGGAAGCTTCAGCTTTCCTGCAAGATGAAAATTTGAAACAAGTCGCTCTGATGGAAGCAAAAATTGAAAAATTGTGCGATTTACTGGATGAGATAATTGTCCGAACCAAAGACAACATTGTTAAGAAGCAAGCTTTAACATATGAGGAGATTGAAGCAGAACGTGAAGAGGAAGAGACACAAGCTGAGTCCGAAAGTGATGATGACGAGCAACAGATTTATAATCCCCTTAAGCTTCCAATGGGTTGGGATGGTAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGTAACTATAGTTACTGGGGCCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAACACAAAGAACTTCAACGAAATCACTTCAATTGAGGAAGCAAAAGAATTGTGGAAGGGAATTCAAGAACGGCAAGGAGTCAACAAGTGGCGACCAGATTTAGACGAAGAATATGAAGATCGAGAGGGTAACATTTACAACAAGAAAACATATACCGATCTCCAACGACAGGGATTGATATAA 1530 41.76 MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKERLLQSHRVRNMIDIITSTTEKLVEIYEDKDNARKDEIAALGGQTASGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDNETLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSAYLDVFSQPQKISRKLKISRQYMEYMENLLAYLIYFFQRTEPLQDIDRIFSKVETEFEEQWNAGIVEGWENIGQDNGHEPAQHNVIDLDYYSTVEELVDLGPGRLKEALAALGLKSGGTVQQRADRLFLTKHTPLQMLDKKHFAKVSRGPIQNGEASAFLQDENLKQVALMEAKIEKLCDLLDEIIVRTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKGIQERQGVNKWRPDLDEEYEDREGNIYNKKTYTDLQRQGLI 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45098124 45104524 + evm.model.ptg000004l.71 HCH11g1310 554777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1310 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
HCH11g1310 509 MobiDBLite consensus disorder prediction 364 382 - -
HCH11g1310 509 MobiDBLite consensus disorder prediction 364 383 - -
HCH11g1310 509 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
HCH11g1310 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
HCH11g1310 509 Pfam Replication stress response SDE2 C-terminal 225 304 IPR025086 -
HCH11g1310 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 174 IPR031774 -
HCH11g1310 509 Coils Coil 353 380 - -
HCH11g1310 509 PANTHER SPLICING FACTOR SF3A-RELATED 1 482 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0160 HCH-Chr10:1317600 HCH11g1310 HCH-Chr11:45098124 5.70E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1310 K12827 - csv:101205916 901.353