Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1314 ATGGGCTATGGAAAACTAAACCAAACAGACCCAGCATCCACCACCACCGCCACGTCACCATTCCGGCGTAAAAAACTCATCTTTATCACCCTGCTCTCCCTCCTCCTCCTCGTCACCGCCGCCACCACCACCACAATCCTCCTCACGAAACCAAAACCAGTAACCAATCCCACTCCGCCACGTAAACCCACGCAAGCCATCTCCAAAGCTTGCAGCCGTACACGATACCCATCTCTCTGCATAAACTCCCTCCTCGATTTCCCCCCATCTCTGACCGCCGACGAGCAAACCCTAATCCACATTTCCTTCAACCTCACTCTCCAACACCTTAACAAAGCTCTCTACTTCTCCTCCCAATTCTCCTCTCTCTCCATGTCTCCCCCTCTCCGATCAGCTTACGACGCTTGCCTCGAACTTCTCGACGATTCCATTGACTCTCTCTCCAAGTCTCTCTCCTCCATCTCCCTCGTCGGCGAGAGAGGAACTTCCAGTGAAGACATCGTGACGTGGCTGAGCGCGGCGCTGACGAATCAAGATACGTGCACGGATGGGATAACGGAAGCGAGCGACGGAAATGGAAATGTGAAGGATTTGATGAGAGAGAAGCTGAAGGATTTGACGGAGCTTTTGAGTAATTGCCTGGCGTTGTTTTCGGGGAGTGATTTGAATAATGATAAGGATTTTGATGGGATTCCGATAAAGAATAGAAGGAGGAGATTGTTGATCGAGAAGGAGAGTGAAGGAAATGAAGATTTTCCGGCGTGGATGAATCGGAGAGAGAGGAAGTTATTGAGTTTACCGGTGACGGAGATTCAAGCAGATATCGTAGTTTCGAAAGACGGGAATGGAACGTGTAAGACGATCAGTGAAGCCATTAAGTTAGCTCCTCAGTTTTCTTCTCGTCGTACTATTATTTTTATCAAGGCTGGCAGGTATGAGGAGAACAACTTGAAGGTGGGGAGGAAGAAAATCAACCTGATGTTTGTCGGTGAGGGGAAGGGCAAAACAGTCATTTCCGGTGCCAAGAGTGTCTTTGACAATATGACAACTTTCCACACGGCTTCGTTTGCGGCTACGGGAGCCGGGTTAATCTTGAGAGATATGACATTCGAGAATTGGGCTGGACCGGGGCGACACCAAGCCGTGGCCCTCCGTATCGGCGCGGACCACGCCGTCGTGTATCGATGCAACGTAATTGGTTATCAAGACACTCTCTACGTTCACTCGAACCGTCAGTTTTTCCGTGAGTGTGATATCTATGGAACCGTAGATTTCATATTCGGCAATGCGGCAGTAGTGTTCCAAAACTGTAGTATCTACGCCCGAAAGGCGATGGATCTTCAAAAAAACACGATCACAGCCCAAAATCGGAAGGATCCAAATCAAAACACGGGAATCTCAATCCATGCATGTCGTATCATGGCCACCCCCGATCTCACAACATCTAATACTAGCAACCCGACGTATCTTGGTCGTCCGTGGAAATTATACTCTAGAGTCGTGTTCATGCTATCGTATATCGGTGGACACGTGCACCCACATGGTTGGCTAGAGTGGAACGCAACGTTCGCTTTAGACACGCTTTACTATGGGGAGTACATGAATTACGGGCCGGGTGGGGCGGTCGGGCAACGGGTAACATGGCCTGGGTATCGGGTCATTACGTCGACGGTCGAGGCCAATAAGTTCACGGTGGCGCAATTCATATATGGGTCGTCGTGGTTGCCGTCCACCGGAGTGGCATTCCTAGGAGGGTTAAATGTGTAA 1767 49.97 MGYGKLNQTDPASTTTATSPFRRKKLIFITLLSLLLLVTAATTTTILLTKPKPVTNPTPPRKPTQAISKACSRTRYPSLCINSLLDFPPSLTADEQTLIHISFNLTLQHLNKALYFSSQFSSLSMSPPLRSAYDACLELLDDSIDSLSKSLSSISLVGERGTSSEDIVTWLSAALTNQDTCTDGITEASDGNGNVKDLMREKLKDLTELLSNCLALFSGSDLNNDKDFDGIPIKNRRRRLLIEKESEGNEDFPAWMNRRERKLLSLPVTEIQADIVVSKDGNGTCKTISEAIKLAPQFSSRRTIIFIKAGRYEENNLKVGRKKINLMFVGEGKGKTVISGAKSVFDNMTTFHTASFAATGAGLILRDMTFENWAGPGRHQAVALRIGADHAVVYRCNVIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKAMDLQKNTITAQNRKDPNQNTGISIHACRIMATPDLTTSNTSNPTYLGRPWKLYSRVVFMLSYIGGHVHPHGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEANKFTVAQFIYGSSWLPSTGVAFLGGLNV 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45155496 45158493 + evm.model.ptg000004l.67 HCH11g1314 554781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1314 588 CDD PMEI-like_3 70 218 - -
HCH11g1314 588 FunFam Pectinesterase 63 220 - -
HCH11g1314 588 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
HCH11g1314 588 SUPERFAMILY Pectin lyase-like 271 584 IPR011050 -
HCH11g1314 588 Gene3D - 268 586 IPR012334 -
HCH11g1314 588 PANTHER PECTINESTERASE 28 577 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH11g1314 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 219 IPR035513 -
HCH11g1314 588 SMART PMEI_2 62 216 IPR006501 GO:0004857(InterPro)
HCH11g1314 588 Pfam Pectinesterase 274 571 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH11g1314 588 FunFam Pectinesterase 268 586 - -
HCH11g1314 588 Pfam Plant invertase/pectin methylesterase inhibitor 66 216 IPR006501 GO:0004857(InterPro)
HCH11g1314 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 218 IPR035513 -
HCH11g1314 588 NCBIfam pectinesterase inhibitor domain 39 217 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1314 HCH-Chr11:45155496 HCH4g1042 HCH-Chr4:6698670 1.50E-131 dispersed
HCH11g1314 HCH-Chr11:45155496 HCH5g0877 HCH-Chr5:7247690 3.20E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1314 - - - 0.0