Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1318 ATGGATCTGGATAGTATTGAGTGTGTATCATCATCGGATGGTATTGATGAAGATGAGATCCATCTTCATCATCATACTCTTCATCCATATTCTCACAATACTGAGTTTTCAACATCTAAGCCTCGCAATAATAGTAGTGCTGCTGTTAATGGTCCCACTGCTACTGCTCCAGCAACTAGTGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTATCCTCCGATCCATCAGTGCCACAATGGACATACCTTATGTTCTACCTGTAAAACAAGGGTTCACAATCGCTGCCCTACTTGTAGACAAGAACTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCTCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGCCCTGAGATATTTCCATACTATAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTACAATTGCCCTTATGCCGGATCTGAATGCTCTGCTGTCGGGGATATTCCTTTTCTTGTTGCCCATCTTAGGGATGATCACAAGGTCGACATGCACACGGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAGGTGGAGAATGCCACATGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTGCACTTTGAAGCCTTCCAGCTCGGCATGGCCCCTGTCTATATGGCTTTCCTTCGTTTCATGGGTGACGAGAATGAGGCTCGAACTTACAGCTACAGTCTCGAGGTCGGTGGATATGGGAGAAAACTAATATGGGAGGGTACTCCGCGAAGTATTAGAGATAGTCATCGAAAAGTAAGGGACAGCCACGATGGATTAATCATCCAAAGAAACATGGCACTTTTCTTTTCTGGTGGGGACAGGAAGGAACTGAAGCTGAGAGTTACAGGGAGGATATGGAAGGAACAAAATCCAGATGCTGGGGTATGCATACCAAACCTTTGTAGCTAA 987 43.87 MDLDSIECVSSSDGIDEDEIHLHHHTLHPYSHNTEFSTSKPRNNSSAAVNGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45186364 45189114 - evm.model.ptg000004l.63 HCH11g1318 554785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1318 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 310 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
HCH11g1318 328 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
HCH11g1318 328 SUPERFAMILY RING/U-box 56 107 - -
HCH11g1318 328 SUPERFAMILY TRAF domain-like 120 312 - -
HCH11g1318 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 308 IPR008974 GO:0005515(InterPro)
HCH11g1318 328 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
HCH11g1318 328 Pfam Sina, TRAF-like domain 211 308 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
HCH11g1318 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 173 IPR013083 -
HCH11g1318 328 FunFam E3 ubiquitin-protein ligase SINAT3 11 118 - -
HCH11g1318 328 FunFam E3 ubiquitin-protein ligase SINAT3 119 175 - -
HCH11g1318 328 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
HCH11g1318 328 CDD Sina 181 309 - -
HCH11g1318 328 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
HCH11g1318 328 Pfam Sina, zinc finger 116 191 - -
HCH11g1318 328 CDD RING-HC_SIAHs 65 103 - -
HCH11g1318 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 119 IPR013083 -
HCH11g1318 328 MobiDBLite consensus disorder prediction 31 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1318 K04506 - - csv:105434867 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1186 HCH-Chr10:42314135 HCH11g1318 HCH-Chr11:45186364 1.20E-135 dispersed
HCH11g1318 HCH-Chr11:45186364 HCH1g0636 HCH-Chr1:55344176 1.70E-135 dispersed
HCH10g0167 HCH-Chr10:1377325 HCH11g1318 HCH-Chr11:45186364 1.20E-143 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0595 . 83 569 C3H Transcription Factor Family AT2G31510 77.0 3.6e-235 810.8
HCH10g0037 . 80 570 C3H Transcription Factor Family AT2G31510 75.8 6.6e-229 790.0
HCH4g0689 . 54 499 C3H Transcription Factor Family AT2G31510 51.9 7.7e-137 484.2
HCH4g0690 . 54 497 C3H Transcription Factor Family AT2G31510 50.7 7.7e-137 484.2
HCH10g0595 . 52 543 C3H Transcription Factor Family AT2G31770 56.5 2.2e-169 592.4
HCH10g0037 . 48 540 C3H Transcription Factor Family AT2G31770 56.7 3.8e-169 591.7
HCH10g0595 . 66 528 C3H Transcription Factor Family AT2G31760 58.7 4.7e-169 591.3
HCH10g0037 . 63 540 C3H Transcription Factor Family AT2G31760 56.9 1.5e-167 586.3
HCH4g0689 . 40 499 C3H Transcription Factor Family AT2G31760 50.5 9.9e-135 477.2
HCH9g1200 . 7 161 C3H Transcription Factor Family AT5G06490 52.7 1.3e-45 179.9
HCH9g1200 . 7 161 C3H Transcription Factor Family AT5G06490 52.7 1.3e-45 179.9
HCH13g0661 . 1 226 C3H Transcription Factor Family AT3G02290 62.0 4.0e-75 278.1
HCH8g0799 . 1 304 C3H Transcription Factor Family AT1G11020 73.8 4.1e-131 464.5
HCH6g0012 . 65 224 C3H Transcription Factor Family AT1G50440 74.4 6.8e-67 250.8
HCH14g0085 . 1 362 C3H Transcription Factor Family AT5G08750 62.0 4.2e-124 441.4
HCH11g0998 . 1 411 C3H Transcription Factor Family AT3G16090 74.4 1.1e-167 586.6
HCH12g1519 . 31 185 C3H Transcription Factor Family AT1G22510 69.0 6.6e-58 220.7
HCH13g0661 . 1 225 C3H Transcription Factor Family AT5G38895 56.2 1.3e-71 266.9
HCH4g0696 . 21 226 C3H Transcription Factor Family AT1G19310 71.6 5.4e-85 310.8
HCH14g0215 . 16 226 C3H Transcription Factor Family AT1G19310 57.7 3.3e-66 248.4
HCH12g1519 . 35 185 C3H Transcription Factor Family AT1G72175 70.9 7.1e-57 216.9
HCH7g1635 . 1 188 C3H Transcription Factor Family AT4G00335 52.9 7.3e-51 197.2
HCH14g0519 . 1 322 C3H Transcription Factor Family AT2G22120 80.9 1.3e-157 552.7
HCH4g0178 . 1 167 C3H Transcription Factor Family AT5G07040 57.5 3.3e-44 174.9
HCH8g1191 . 1 389 C3H Transcription Factor Family AT1G18470 77.1 7.5e-181 630.2
HCH10g1238 . 12 389 C3H Transcription Factor Family AT1G18470 64.5 6.9e-142 500.7
HCH10g1240 . 11 389 C3H Transcription Factor Family AT1G18470 62.5 5.1e-137 484.6
HCH10g1295 . 124 384 C3H Transcription Factor Family AT1G68200 53.0 8.4e-49 191.0
HCH10g0595 . 52 543 C3H Transcription Factor Family AT2G31770 56.5 2.2e-169 592.4
HCH10g0037 . 48 540 C3H Transcription Factor Family AT2G31770 56.7 3.8e-169 591.7
HCH10g0595 . 66 528 C3H Transcription Factor Family AT2G31760 58.7 4.7e-169 591.3
HCH10g0037 . 63 540 C3H Transcription Factor Family AT2G31760 56.9 1.5e-167 586.3
HCH4g0689 . 40 499 C3H Transcription Factor Family AT2G31760 50.5 9.9e-135 477.2
HCH5g0065 . 2 347 C3H Transcription Factor Family AT2G30580 53.0 5.6e-86 314.7
HCH12g1319 . 44 280 C3H Transcription Factor Family AT5G55970 66.4 1.5e-93 339.7
HCH12g1317 . 45 275 C3H Transcription Factor Family AT5G55970 67.7 2.0e-93 339.3
HCH14g0085 . 1 362 C3H Transcription Factor Family AT5G63780 58.0 3.0e-117 418.7
HCH11g0555 . 1 422 C3H Transcription Factor Family AT3G58030 52.2 1.2e-104 377.1
HCH12g1319 . 50 346 C3H Transcription Factor Family AT4G26580 65.6 5.3e-113 404.4
HCH12g1317 . 46 330 C3H Transcription Factor Family AT4G26580 65.5 4.5e-112 401.4
HCH12g1618 . 21 160 C3H Transcription Factor Family AT4G10150 57.6 4.8e-44 174.9
HCH4g1193 . 1 246 C3H Transcription Factor Family AT3G63530 51.0 1.2e-66 250.0
HCH9g0858 . 1 466 C3H Transcription Factor Family AT5G01960 69.9 6.0e-170 594.0
HCH1g0256 . 24 464 C3H Transcription Factor Family AT5G01960 61.9 5.6e-152 534.3
HCH7g0359 . 1 144 C3H Transcription Factor Family AT2G04240 59.5 5.9e-41 164.1
HCH2g1337 . 1 240 C3H Transcription Factor Family AT5G19430 51.4 1.2e-59 226.9
HCH2g1337 . 17 240 C3H Transcription Factor Family AT5G12310 58.8 8.8e-60 227.3
HCH13g0528 . 7 190 C3H Transcription Factor Family AT5G05830 59.4 2.0e-54 209.1
HCH11g0131 . 70 231 C3H Transcription Factor Family AT5G05830 59.3 4.2e-52 201.4
HCH9g0739 . 72 208 C3H Transcription Factor Family AT5G05830 57.7 9.0e-39 157.1
HCH13g0661 . 1 226 C3H Transcription Factor Family AT5G15790 57.8 1.4e-72 269.6
HCH9g0329 . 1 207 C3H Transcription Factor Family AT5G15790 51.9 8.3e-57 217.2
HCH13g0498 . 1 277 C3H Transcription Factor Family AT3G55530 80.6 2.9e-117 418.3
HCH4g0944 . 1 273 C3H Transcription Factor Family AT1G63900 74.5 3.2e-116 414.8
HCH7g1487 . 10 393 C3H Transcription Factor Family AT2G44580 54.7 3.8e-123 438.3
HCH8g1286 . 69 217 C3H Transcription Factor Family AT1G74410 57.0 6.8e-48 187.6
HCH4g0696 . 17 149 C3H Transcription Factor Family AT1G74990 57.8 1.9e-40 162.2
HCH12g0447 . 3 313 C3H Transcription Factor Family AT5G20910 64.6 5.8e-114 407.5
HCH11g0998 . 119 419 C3H Transcription Factor Family AT1G65040 67.7 1.6e-106 382.9
HCH14g0215 . 17 228 C3H Transcription Factor Family AT2G23780 61.6 8.1e-73 270.4
HCH4g0696 . 6 228 C3H Transcription Factor Family AT2G23780 57.0 4.2e-69 258.1
HCH9g0968 . 26 452 C3H Transcription Factor Family AT3G10810 51.6 7.6e-84 308.1
HCH5g0530 . 1 166 C3H Transcription Factor Family AT1G63840 57.0 1.2e-46 183.0
HCH13g1115 . 1 157 C3H Transcription Factor Family AT1G63840 52.5 1.4e-42 169.5
HCH10g1364 . 1 335 C3H Transcription Factor Family AT1G68070 61.6 1.2e-117 419.9
HCH7g1596 . 49 376 C3H Transcription Factor Family AT1G68070 50.5 7.9e-88 320.9
HCH12g0043 . 4 174 C3H Transcription Factor Family AT1G76410 55.9 1.0e-49 193.4
HCH13g1292 . 1 188 C3H Transcription Factor Family AT1G76410 50.5 2.6e-45 178.7
HCH4g0398 . 1 413 C3H Transcription Factor Family AT1G80400 55.6 4.3e-117 418.3
HCH10g0595 . 83 569 C3H Transcription Factor Family AT2G31510 77.0 3.6e-235 810.8
HCH10g0037 . 80 570 C3H Transcription Factor Family AT2G31510 75.8 6.6e-229 790.0
HCH4g0689 . 54 499 C3H Transcription Factor Family AT2G31510 51.9 7.7e-137 484.2
HCH4g0690 . 54 497 C3H Transcription Factor Family AT2G31510 50.7 7.7e-137 484.2
HCH9g1200 . 6 160 C3H Transcription Factor Family AT2G35910 63.0 5.2e-53 204.5
HCH11g0491 . 1 169 C3H Transcription Factor Family AT2G35910 54.8 6.8e-45 177.6
HCH9g1156 . 1 306 C3H Transcription Factor Family AT2G41980 81.5 3.4e-151 531.2
HCH2g1428 . 12 317 C3H Transcription Factor Family AT2G41980 70.3 2.8e-129 458.4
HCH11g1318 . 39 315 C3H Transcription Factor Family AT2G41980 76.5 6.3e-129 457.2
HCH1g0636 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 1.3e-126 449.5
HCH10g1186 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 2.2e-126 448.7
HCH10g0167 . 57 315 C3H Transcription Factor Family AT2G41980 73.7 1.6e-119 426.0
HCH7g1169 . 119 378 C3H Transcription Factor Family AT3G06140 65.9 4.8e-96 348.2
HCH11g0276 . 33 331 C3H Transcription Factor Family AT3G09770 59.7 6.2e-85 311.2
HCH10g1294 . 1 154 C3H Transcription Factor Family AT1G15100 55.8 2.4e-39 158.7
HCH9g0020 . 137 665 C3H Transcription Factor Family AT3G26730 56.8 4.2e-171 598.6
HCH3g0333 . 58 352 C3H Transcription Factor Family AT3G47990 72.8 7.6e-127 450.3
HCH8g1380 . 58 371 C3H Transcription Factor Family AT3G47990 69.6 1.3e-126 449.5
HCH6g1379 . 8 190 C3H Transcription Factor Family AT5G17600 51.6 7.6e-49 191.4
HCH12g0043 . 4 181 C3H Transcription Factor Family AT1G20823 56.3 1.6e-53 206.1
HCH13g1292 . 1 186 C3H Transcription Factor Family AT1G20823 51.3 2.2e-42 169.1
HCH13g1327 . 20 235 C3H Transcription Factor Family AT5G66070 76.9 8.2e-78 287.0
HCH11g0231 . 9 286 C3H Transcription Factor Family AT5G02750 50.3 1.7e-64 243.0
HCH8g1191 . 5 467 C3H Transcription Factor Family AT1G73950 72.4 7.5e-200 693.3
HCH10g1238 . 12 467 C3H Transcription Factor Family AT1G73950 61.0 1.4e-158 556.2
HCH10g1240 . 12 467 C3H Transcription Factor Family AT1G73950 60.3 1.6e-157 552.7
HCH6g0528 . 1 105 C3H Transcription Factor Family AT1G73950 63.0 1.4e-36 151.0
HCH3g0939 . 1 105 C3H Transcription Factor Family AT1G73950 62.0 1.8e-36 150.6
HCH12g1618 . 21 161 C3H Transcription Factor Family AT1G33480 58.9 1.7e-42 169.9
HCH10g1364 . 3 233 C3H Transcription Factor Family AT2G01735 56.1 2.0e-67 252.7
HCH6g0945 . 61 270 C3H Transcription Factor Family AT2G01735 52.4 4.8e-50 194.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000123 7 13 5 5 9 4 10 5 6 5 4 3 7 6 6 10 5 13 9 4 6 6 7 7 7 5 6 22 16 5 223