Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1318 ATGGATCTGGATAGTATTGAGTGTGTATCATCATCGGATGGTATTGATGAAGATGAGATCCATCTTCATCATCATACTCTTCATCCATATTCTCACAATACTGAGTTTTCAACATCTAAGCCTCGCAATAATAGTAGTGCTGCTGTTAATGGTCCCACTGCTACTGCTCCAGCAACTAGTGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTATCCTCCGATCCATCAGTGCCACAATGGACATACCTTATGTTCTACCTGTAAAACAAGGGTTCACAATCGCTGCCCTACTTGTAGACAAGAACTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCTCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGCCCTGAGATATTTCCATACTATAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTACAATTGCCCTTATGCCGGATCTGAATGCTCTGCTGTCGGGGATATTCCTTTTCTTGTTGCCCATCTTAGGGATGATCACAAGGTCGACATGCACACGGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAGGTGGAGAATGCCACATGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTGCACTTTGAAGCCTTCCAGCTCGGCATGGCCCCTGTCTATATGGCTTTCCTTCGTTTCATGGGTGACGAGAATGAGGCTCGAACTTACAGCTACAGTCTCGAGGTCGGTGGATATGGGAGAAAACTAATATGGGAGGGTACTCCGCGAAGTATTAGAGATAGTCATCGAAAAGTAAGGGACAGCCACGATGGATTAATCATCCAAAGAAACATGGCACTTTTCTTTTCTGGTGGGGACAGGAAGGAACTGAAGCTGAGAGTTACAGGGAGGATATGGAAGGAACAAAATCCAGATGCTGGGGTATGCATACCAAACCTTTGTAGCTAA 987 43.87 MDLDSIECVSSSDGIDEDEIHLHHHTLHPYSHNTEFSTSKPRNNSSAAVNGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45186364 45189114 - evm.model.ptg000004l.63 HCH11g1318 554785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1318 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 310 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
HCH11g1318 328 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
HCH11g1318 328 SUPERFAMILY RING/U-box 56 107 - -
HCH11g1318 328 SUPERFAMILY TRAF domain-like 120 312 - -
HCH11g1318 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 308 IPR008974 GO:0005515(InterPro)
HCH11g1318 328 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
HCH11g1318 328 Pfam Sina, TRAF-like domain 211 308 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
HCH11g1318 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 173 IPR013083 -
HCH11g1318 328 FunFam E3 ubiquitin-protein ligase SINAT3 11 118 - -
HCH11g1318 328 FunFam E3 ubiquitin-protein ligase SINAT3 119 175 - -
HCH11g1318 328 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
HCH11g1318 328 CDD Sina 181 309 - -
HCH11g1318 328 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
HCH11g1318 328 Pfam Sina, zinc finger 116 191 - -
HCH11g1318 328 CDD RING-HC_SIAHs 65 103 - -
HCH11g1318 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 119 IPR013083 -
HCH11g1318 328 MobiDBLite consensus disorder prediction 31 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1186 HCH-Chr10:42314135 HCH11g1318 HCH-Chr11:45186364 1.20E-135 dispersed
HCH11g1318 HCH-Chr11:45186364 HCH1g0636 HCH-Chr1:55344176 1.70E-135 dispersed
HCH10g0167 HCH-Chr10:1377325 HCH11g1318 HCH-Chr11:45186364 1.20E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1318 K04506 - csv:105434867 644.425