Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH11g1318 | ATGGATCTGGATAGTATTGAGTGTGTATCATCATCGGATGGTATTGATGAAGATGAGATCCATCTTCATCATCATACTCTTCATCCATATTCTCACAATACTGAGTTTTCAACATCTAAGCCTCGCAATAATAGTAGTGCTGCTGTTAATGGTCCCACTGCTACTGCTCCAGCAACTAGTGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTATCCTCCGATCCATCAGTGCCACAATGGACATACCTTATGTTCTACCTGTAAAACAAGGGTTCACAATCGCTGCCCTACTTGTAGACAAGAACTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCTCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGCCCTGAGATATTTCCATACTATAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCCTACAATTGCCCTTATGCCGGATCTGAATGCTCTGCTGTCGGGGATATTCCTTTTCTTGTTGCCCATCTTAGGGATGATCACAAGGTCGACATGCACACGGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAGGTGGAGAATGCCACATGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTGCACTTTGAAGCCTTCCAGCTCGGCATGGCCCCTGTCTATATGGCTTTCCTTCGTTTCATGGGTGACGAGAATGAGGCTCGAACTTACAGCTACAGTCTCGAGGTCGGTGGATATGGGAGAAAACTAATATGGGAGGGTACTCCGCGAAGTATTAGAGATAGTCATCGAAAAGTAAGGGACAGCCACGATGGATTAATCATCCAAAGAAACATGGCACTTTTCTTTTCTGGTGGGGACAGGAAGGAACTGAAGCTGAGAGTTACAGGGAGGATATGGAAGGAACAAAATCCAGATGCTGGGGTATGCATACCAAACCTTTGTAGCTAA | 987 | 43.87 | MDLDSIECVSSSDGIDEDEIHLHHHTLHPYSHNTEFSTSKPRNNSSAAVNGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 45186364 | 45189114 | - | evm.model.ptg000004l.63 | HCH11g1318 | 554785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH11g1318 | 328 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 38 | 310 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
HCH11g1318 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 67 | 103 | IPR001841 | - | |
HCH11g1318 | 328 | SUPERFAMILY | RING/U-box | 56 | 107 | - | - | |
HCH11g1318 | 328 | SUPERFAMILY | TRAF domain-like | 120 | 312 | - | - | |
HCH11g1318 | 328 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 174 | 308 | IPR008974 | GO:0005515(InterPro) | |
HCH11g1318 | 328 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 176 | 308 | - | - | |
HCH11g1318 | 328 | Pfam | Sina, TRAF-like domain | 211 | 308 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
HCH11g1318 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 173 | IPR013083 | - | |
HCH11g1318 | 328 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 118 | - | - | |
HCH11g1318 | 328 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 119 | 175 | - | - | |
HCH11g1318 | 328 | ProSiteProfiles | Zinc finger SIAH-type profile. | 120 | 180 | IPR013010 | GO:0008270(InterPro) | |
HCH11g1318 | 328 | CDD | Sina | 181 | 309 | - | - | |
HCH11g1318 | 328 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 67 | 102 | IPR049548 | - | |
HCH11g1318 | 328 | Pfam | Sina, zinc finger | 116 | 191 | - | - | |
HCH11g1318 | 328 | CDD | RING-HC_SIAHs | 65 | 103 | - | - | |
HCH11g1318 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 119 | IPR013083 | - | |
HCH11g1318 | 328 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1186 | HCH-Chr10:42314135 | HCH11g1318 | HCH-Chr11:45186364 | 1.20E-135 | dispersed | |
HCH11g1318 | HCH-Chr11:45186364 | HCH1g0636 | HCH-Chr1:55344176 | 1.70E-135 | dispersed | |
HCH10g0167 | HCH-Chr10:1377325 | HCH11g1318 | HCH-Chr11:45186364 | 1.20E-143 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH11g1318 | K04506 | - | csv:105434867 | 644.425 |