Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1331 ATGGCTTTGCTGAGTCCAAAATTACATAGATTTCTCTTAACAAAGCTCCACCATAGCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTCTCCTTCTCCAAAACTACTAAAACAAATAAACTTATTATCAGAAGAAGAAGCAGCAGATGCTGCTCTGCTATAGCCATTGATGCTCCTTCTTCTTTGACAGACAATGAAGGGATCAGATGGGGTTCTGCTACTTTGCAAGGATTGCGTGAAGAAATGGAGGATGCAGCTGTTGTCAGGTCTGATGGTATTGATGGTTACTTGTTTGCTGCTGTTTTTGATGGTCATGGTGGCTATTCCTCTGTCAAGTTTCTCAGGGATGAGCTGTACAAAGACTGTGTAGCAGCTTTACAAGGTGGCCTGCTATTGAAAGGAGGAGATTTCAATTTGATAAAAGCTGCATTGGAGAAGGCTTTTGATGATACTGATAAAAGATTACTCCTTTTGCTCGAGACTGTTGCGGGGGAAGATGAATCTGGTGCCACTGCAACTGTTGCTCTCATAGGAAATGATGTGCTGTTCATTTCACATATTGGTGATTCATGTGTTGTTTTATCGCGTTCCGGAGGATCACAAGTATTGACGAGTTCTCACCGCCCTTACGGAAACAACAGTACCTCGCTGCAAGAAGTTAGAAGAATTAGAGAAGCAGGTGGATGGATCGTTAATGGAAGAATCTGTGGAGACATCTCTGTATCTCGTGCGTTTGGTGACATACGATTCAAGACAAAGAAAAACAAGATGCTGCAGAAAGGAGTTGAAGAGAGGAGATGGTCCGAAAAATTTGTTTCTCGTGTACGGTTCAATGGAGACTTGGTTACTGCATCACCAGATATTTTACAAGTCGCTCTCGGATCAAATGTTGAGTTTGTATTGATAGCATCTGATGGCTTATGGGATTACATGAGCAGCTCGGATGCAGTTACGTTTGTTCGGAATCAACTTAGACAACATGGTGATGTGCAGCTAGCTAGTGAAGCACTTGCACAAGCAGCTCTGGAAAAAGGGTCACAAGATAATATCAGCATTGTGGTGGCTGATTTGGGGCGGACAGATTGGCAGAATTTGCCCCTTCAGAAAGACAATTTCATATTTGAACTGGCTCAAGCTTTTGCTACAATTGGAATTGTGACTTTTGGTGTTTGGATATCCTCTGTTTTCTCTCTTTAA 1194 42.71 MALLSPKLHRFLLTKLHHSSSSSSSSSSFSFSKTTKTNKLIIRRRSSRCCSAIAIDAPSSLTDNEGIRWGSATLQGLREEMEDAAVVRSDGIDGYLFAAVFDGHGGYSSVKFLRDELYKDCVAALQGGLLLKGGDFNLIKAALEKAFDDTDKRLLLLLETVAGEDESGATATVALIGNDVLFISHIGDSCVVLSRSGGSQVLTSSHRPYGNNSTSLQEVRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKNKMLQKGVEERRWSEKFVSRVRFNGDLVTASPDILQVALGSNVEFVLIASDGLWDYMSSSDAVTFVRNQLRQHGDVQLASEALAQAALEKGSQDNISIVVADLGRTDWQNLPLQKDNFIFELAQAFATIGIVTFGVWISSVFSL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45244950 45248245 + evm.model.ptg000004l.50 HCH11g1331 554798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1331 397 FunFam Protein phosphatase 2C 57 67 363 - -
HCH11g1331 397 SMART PP2C_4 58 354 IPR001932 -
HCH11g1331 397 PANTHER PROTEIN PHOSPHATASE 2C 47 355 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH11g1331 397 CDD PP2Cc 67 356 IPR001932 -
HCH11g1331 397 ProSiteProfiles PPM-type phosphatase domain profile. 68 356 IPR001932 -
HCH11g1331 397 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169(InterPro)
HCH11g1331 397 Gene3D - 67 362 IPR036457 -
HCH11g1331 397 Pfam Protein phosphatase 2C 70 349 IPR001932 -
HCH11g1331 397 SUPERFAMILY PP2C-like 64 357 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1331 HCH-Chr11:45244950 HCH12g0442 HCH-Chr12:2557650 1.90E-29 dispersed
HCH7g1094 HCH-Chr7:43516206 HCH11g1331 HCH-Chr11:45244950 8.80E-06 dispersed
HCH9g0672 HCH-Chr9:4456440 HCH11g1331 HCH-Chr11:45244950 8.70E-06 dispersed
HCH11g1331 HCH-Chr11:45244950 HCH1g0356 HCH-Chr1:50431583 2.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1331 K04457 - csv:101218076 620.542