Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1355 ATGGGATCAACAGGTGAAACCCAGATGACTGAAACTGAAATAAGTGATGAAGAAACAAATCTTTTTGCCATGCAATTAGCAAGCGCCTCTGTTCTTCCAATGGTCTTGAAATCAGCCATTGAGCTTGATCTTCTTGAGATCATTGCAAGAGCTGGACATGGTGCTTTCTTGTCGGCTTCCGATATCGCTTCTCAGGTTCCGACAAAGAATCCTCAGGCAGATGTTGTTTTGGACCGTATGTTACGATTGCTGGCAAGTTACTCAATCCTTAAGTATTCACTAAGAACTCTCCCTGATGGCAGAGTTGAGAGGTTGTATGGAGTGGGTCCTGTTTGTAAGTTCTTGACTAAGAATGAAGATGGTGTCTCCATTGCTCCTCTTTGCCTCATGAATCAGGATAAGGTTCTCATGGAAAGCTGGTACCATTTGAAAGATGCAGTATTGGAAGGTGGGATTCCATTCAATAAGGCATATGGAATGACAGCATTTGACTATCATGGAACTGATCCCAGATTCAACAAGGTTTTCAACAGAGGAATGTCTGATCATTCCACCATTACTATGAAGAAGATTCTTGAGACCTACAAAGGCTTTGAAGGCCTCTCTTCACTTGTTGATGTCGGCGGTGGGACTGGAGCTGTCGTTAACATGATCATTTCTAAGTACCCCTCCATTCGAGGCATCAACTTCGATTTGCCTCATGTCATTGAGGATGCTCCTGCTTATCCCGGTGTGGAGCATGTTGGTGGTGACATGTTCGTCAGTGTACCAAAGGCTGATGCTATTTTCATGAAGTGGATCTGCCACGATTGGAGTGATCAGCACTGCTTGAAATTTCTGAAGAACTGCTACGAGGCATTGCCAGAGAACGGGAAGGTGATAGTGGCAGAATGCATTCTTCCAGTAGCTCCAGACAGCAGCCTTGCAGCAAAGGGAGTGATTCACATTGATGTGATAATGTTGGCTCACAACCCAGGAGGGAAAGAAAGGACAGAGAAGGAGTTTGAGGCATTGGCCAAGGGAGCTGGATTCCAAGGTTTTAAAGTCCAATGTTGTGCTTTCAACACATATGTCATAGAATTTCTCAAGACAGTTTGA 1098 44.35 MGSTGETQMTETEISDEETNLFAMQLASASVLPMVLKSAIELDLLEIIARAGHGAFLSASDIASQVPTKNPQADVVLDRMLRLLASYSILKYSLRTLPDGRVERLYGVGPVCKFLTKNEDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFDYHGTDPRFNKVFNRGMSDHSTITMKKILETYKGFEGLSSLVDVGGGTGAVVNMIISKYPSIRGINFDLPHVIEDAPAYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDQHCLKFLKNCYEALPENGKVIVAECILPVAPDSSLAAKGVIHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFKVQCCAFNTYVIEFLKTV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45377376 45380233 - evm.model.ptg000004l.26 HCH11g1355 554822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1355 365 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
HCH11g1355 365 FunFam Caffeic acid O-methyltransferase 116 363 - -
HCH11g1355 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983(InterPro)
HCH11g1355 365 Gene3D - 1 115 IPR036388 -
HCH11g1355 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168(InterPro)
HCH11g1355 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
HCH11g1355 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171(InterPro)
HCH11g1355 365 CDD AdoMet_MTases 204 295 - -
HCH11g1355 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168(InterPro)
HCH11g1355 365 PANTHER O-METHYLTRANSFERASE 18 352 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
HCH11g1355 365 SUPERFAMILY Winged helix DNA-binding domain 16 119 IPR036390 -
HCH11g1355 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 361 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0341 HCH-Chr11:3184121 HCH11g1355 HCH-Chr11:45377376 1.20E-57 dispersed
HCH11g1355 HCH-Chr11:45377376 HCH6g0866 HCH-Chr6:43488373 2.30E-114 dispersed
HCH11g1355 HCH-Chr11:45377376 HCH11g1356 HCH-Chr11:45382797 1.40E-175 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1355 K13066 - mdm:103410332 657.521