Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH11g1356 ATGGGAACAAGGAGTGAAACCCAAATGGCTCCATCACCAACCCAAGTAACTGATGAAGAAGAAGCAAACCATTTCGCCATGCAATTAGCAAACGCCTCTGTTTTTCCAATGGTCTTGAAATCAGCCATTGAGCTTGATCTTCTTGAGATCATTGCTAGAGCTGGACATGGTGCTTTCTTGTCTCCTTCCGATATAGCTTCTCAGCTTCCGACAACGAATCCTCAGGCCGATGTTGTTTTGGACCGTATCTTACGCCTGCTGGCGAGCTACTTAATCCTTACTTATTCACTAAGAACTCTCCCTGATGGCAGAGTTGAGAGGTTGTATGGAGTGGCCCCAGTGTGCAAGTTCTTAACCAAGAATGAAGATGGCATGTCTCTTGCCCCTCTTTGTCTCTTGAATCATGATAAGGTCTTCATGGAAATGTGGTACCATTTGAAAGATGCAGTACTTGCAGGAGGGACTCCATTCAACAGGGCTTATGGAATGTCAGTATATGAGTATCTTGGAACTGATCCCAGATTCAACCAGGTTTTCAACAAGGGAATACTGTCTGATTATTCCATCATGTCTATGAAGAAGATTCTCGAGATCTACAAAGGCTTTGAAGGCCTCTCTTCACTTGTCGATATCGGAGGTGGAACTGGAGCTGTCATTAACGTGATCATTTCTAAGTACCCTTCTATTCGGGGCATCAACTTCGACTTGCCTCATGTCATTGAGAATGCTCCTGCTTATCCTGGTGTGGAGCATGTTGGGGGTGACATGTTCCTCAGTGTGCCAAAGGCTGATGCTATTTTCATGAAGTGGATATTGGATGATTGGAACGACGAGCACTGCTTGAAATTTCTGAAGAATTGCTACGACGCATTGCCAGAAGATGGGAAGGTGATAGTGGCCGAAAGCATTCTTCCGGTGGCTCCCGACAGCAGCCTTGCAACAAAGGGAGTGATTAACATTGATCTCATAATGTTTGCTCACAATCCAGAAGGGAAAGAAAGGACAGAGAAGGAGTTTGAGGCGTTGGCAAAAGGAGCTGGGTTCCAAGGTTTTAAAGTCCAGTGTTGTGCTTTCAACACTTATATCATGGAATTTCTCAAGAGAGTTTGA 1110 44.77 MGTRSETQMAPSPTQVTDEEEANHFAMQLANASVFPMVLKSAIELDLLEIIARAGHGAFLSPSDIASQLPTTNPQADVVLDRILRLLASYLILTYSLRTLPDGRVERLYGVAPVCKFLTKNEDGMSLAPLCLLNHDKVFMEMWYHLKDAVLAGGTPFNRAYGMSVYEYLGTDPRFNQVFNKGILSDYSIMSMKKILEIYKGFEGLSSLVDIGGGTGAVINVIISKYPSIRGINFDLPHVIENAPAYPGVEHVGGDMFLSVPKADAIFMKWILDDWNDEHCLKFLKNCYDALPEDGKVIVAESILPVAPDSSLATKGVINIDLIMFAHNPEGKERTEKEFEALAKGAGFQGFKVQCCAFNTYIMEFLKRV 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 45382797 45384495 - evm.model.ptg000004l.25 HCH11g1356 554823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH11g1356 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 365 IPR029063 -
HCH11g1356 369 Pfam Dimerisation domain 37 88 IPR012967 GO:0046983(InterPro)
HCH11g1356 369 Pfam O-methyltransferase domain 143 349 IPR001077 GO:0008171(InterPro)
HCH11g1356 369 FunFam Caffeic acid 3-O-methyltransferase 3 118 - -
HCH11g1356 369 PIRSF O-mtase 3 367 IPR016461 GO:0008168(InterPro)
HCH11g1356 369 CDD AdoMet_MTases 208 299 - -
HCH11g1356 369 Gene3D Vaccinia Virus protein VP39 119 367 IPR029063 -
HCH11g1356 369 FunFam Caffeic acid O-methyltransferase 119 367 - -
HCH11g1356 369 SUPERFAMILY Winged helix DNA-binding domain 18 122 IPR036390 -
HCH11g1356 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 367 IPR016461 GO:0008168(InterPro)
HCH11g1356 369 Gene3D - 3 118 IPR036388 -
HCH11g1356 369 PANTHER O-METHYLTRANSFERASE 23 356 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1356 HCH-Chr11:45382797 HCH6g0866 HCH-Chr6:43488373 3.30E-116 dispersed
HCH11g1355 HCH-Chr11:45377376 HCH11g1356 HCH-Chr11:45382797 1.40E-175 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH11g1356 K13066 - rcu:8282965 587.8