Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0017 ATGGCTTTGCTGCTATTAATACTGATTTATGCATCAGTTGCCGTTGCAGTTGACACCCAGCCCGGATGCCAATTCAAATGTGGGAATGTTTCGATTCCCTATCCTTTTGGGATTGGTTTTGGTTGTTATATGGGCAACGGTTTCGATATAACTTGTAATTCTTCCTTTAATCCTCCATTGCCTTTCATTGGCACCAGTAACCTTGAGGTTTTGGAAATATCTTTGACTCAGCTTCGCATCCGTAATGTGGTTGCATACAATTGCTATGCAAAAACTGGGGCTCTTCTTGCCCGATCTGGTGCCTGGATCAATTTGGGTAACTACCCATTCTTCTTCTCTACACAAAACAAGTTCACTGTTATCGGTTGCGACACCCTGGCCTTGATTACTGGCACCCAGGGACTTCAATACACCAGTGGATGCGTGTCTTTGTGCTCTAACAAGGACACCGTTATCAATGGTTCCTGCTCTGGAATTGGATGCTGCCAGACGGCTGTTCCCAGAGGCCTCAAGAGGTTCGAAGCTCTCATTGCCAACCTTAACAACCACACCAAGACTTGGCAATTCAACCCTTGCAGCTACGCCTTTCTAGTGGACCAAGACCGCTACAGCTTTGAGGTGTCTGATCTTGCAGATCCCAGTTTTCTCACCTCCATTATAAATATGCCAGTTGTTCTTGACTGGGTTGTGGGCGACGCAACCTGTGAAGAAGCTCGGAAAGGGTTGTCAACATACGTTTGCCAGGAGAATAGCGAATGTTTTGATTCAGAAAACGGCATTGGTTATCAATGCCGCTGTAATAAAGGTTACCATGGGAACCCATATCTCAATCCTGGATGCCAAGATATCAACGAGTGTGATAGTCCCAACAATCCTTGTGAAAGCATATGCGTGAATACCCAGGGTAGTTATTACTGTTCATGTCCTCGTGGTTCTTACGGTGATGGTACGAAAGACGGCAAGGGATGCATCACCAAAACCAAACAATTCCCACTTATTCAGCTCACTCTCGGTCTTGGCTTAGGCCTCTTGTTTCTTATCATCTCAACCACTTGGCTTTACTTCAGTTTTAAAAAGAGGAACCTGGTTAAACTCAGAGAGAAATTCTTCAAGGAGAATGGGGGTCTATTATTGCAGCAACGGTTAGGGAGTCATGATGGTGCTGTTGAGTCCACTAAAATCTTCACGGCAGAAGAGTTGGAGAAAGCTACGAACAATTACGCGGAGGCTCGAATCCTTGGTAGAGGTGGAAATGGGACAGTTTACAAAGGAATTTTACCAGACGACAGAATAGTGGCCATTAAGAAGTCTAAAATAGTGGATCAGAACCAAATTGAACAGTTTATCAATGAAGTAATAATTCTAGCACAAGTTAATCACCGGAATGTGGTGAAGCTGATGGGATGCTGCCTGGAGACAGAAGTTCCACTCCTGGTATATGAATTCGTATCGAATGGGACTCTATTTAGCCACATTCACCAAACGAAGAGCGTGAATTGGAATTCCATGTCTTGGGAAAACCGGTTGAGAATAGCAACTGAAACAGCAGGAGCTCTTTCATATCTGCATTCAGCAGCCAACACACCCATCATTCATAGAGATGTGAAGTCTGCGAACATATTGTTAGACAACAAATGCATAGCAAAAGTAGCTGACTTTGGAGCTTCGAGGTTTATTCCAATAGACCAATGGCAGATAACAACACTAGTTCAAGGTACATTTGGTTATTTAGATCCTGAATATTTTCAAACAAGTCAATTGACCGAGAAGAGTGATGTGTATAGTTTTGGGGTGGTTCTAGTGGAGCTGTTGACGGGGGAGTTGCCGGTATCGTTCGAGAGATCGGAATCAGAGAGAAATCTGTCTTCGTATTTTGTATCATCGTTGAGACAAAATAGATTGTTTAGAATAGTAGAGGGAAGAGTGTTGAGAGAGGGAAAGAGAGAGGAAGTGATAGGAGCGGCAGAGTTGGCGAGGAAATGCCTCAAGTTGAAAGGGGAAGAGAGGCCAAGCATGAGAGAAGTGGTTGCAGAGCTAGAAAGGTTGAAAAGAAAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGGCCGAGGATTTATATCCAATCGGGACGTCTACAGTGGAGGCTTATAATGTGTTCGAGTGTGAGTCTCAGCCTCTTCGCAGTGCATCATCATCCAGATCCACTGCCAATACCTTCACTTCTTCCCTCCATCTCCCCCGATGA 2232 44.53 MALLLLILIYASVAVAVDTQPGCQFKCGNVSIPYPFGIGFGCYMGNGFDITCNSSFNPPLPFIGTSNLEVLEISLTQLRIRNVVAYNCYAKTGALLARSGAWINLGNYPFFFSTQNKFTVIGCDTLALITGTQGLQYTSGCVSLCSNKDTVINGSCSGIGCCQTAVPRGLKRFEALIANLNNHTKTWQFNPCSYAFLVDQDRYSFEVSDLADPSFLTSIINMPVVLDWVVGDATCEEARKGLSTYVCQENSECFDSENGIGYQCRCNKGYHGNPYLNPGCQDINECDSPNNPCESICVNTQGSYYCSCPRGSYGDGTKDGKGCITKTKQFPLIQLTLGLGLGLLFLIISTTWLYFSFKKRNLVKLREKFFKENGGLLLQQRLGSHDGAVESTKIFTAEELEKATNNYAEARILGRGGNGTVYKGILPDDRIVAIKKSKIVDQNQIEQFINEVIILAQVNHRNVVKLMGCCLETEVPLLVYEFVSNGTLFSHIHQTKSVNWNSMSWENRLRIATETAGALSYLHSAANTPIIHRDVKSANILLDNKCIAKVADFGASRFIPIDQWQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGELPVSFERSESERNLSSYFVSSLRQNRLFRIVEGRVLREGKREEVIGAAELARKCLKLKGEERPSMREVVAELERLKRKNENENENENENEAEDLYPIGTSTVEAYNVFECESQPLRSASSSRSTANTFTSSLHLPR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 129051 131464 - evm.model.ptg000002l.1642 HCH12g0017 554864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0017 743 SMART egf_5 285 324 IPR000742 -
HCH12g0017 743 SMART egf_5 234 281 IPR000742 -
HCH12g0017 743 SUPERFAMILY Protein kinase-like (PK-like) 389 680 IPR011009 -
HCH12g0017 743 SUPERFAMILY EGF/Laminin 280 324 - -
HCH12g0017 743 ProSiteProfiles EGF-like domain profile. 231 281 IPR000742 -
HCH12g0017 743 Pfam Wall-associated receptor kinase galacturonan-binding 23 80 IPR025287 GO:0030247(InterPro)
HCH12g0017 743 Gene3D Laminin 233 285 - -
HCH12g0017 743 Gene3D Laminin 286 325 - -
HCH12g0017 743 SMART serkin_6 407 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0017 743 FunFam Fibrillin 2 281 319 - -
HCH12g0017 743 Gene3D Phosphorylase Kinase; domain 1 383 482 - -
HCH12g0017 743 FunFam Wall-associated receptor kinase 2 377 482 - -
HCH12g0017 743 FunFam Wall-associated receptor kinase 2 233 280 - -
HCH12g0017 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 689 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH12g0017 743 Pfam Wall-associated kinase 154 230 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
HCH12g0017 743 Coils Coil 672 699 - -
HCH12g0017 743 CDD EGF_CA 282 315 - -
HCH12g0017 743 ProSiteProfiles Protein kinase domain profile. 407 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0017 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 297 308 IPR000152 -
HCH12g0017 743 CDD STKc_IRAK 413 682 - -
HCH12g0017 743 MobiDBLite consensus disorder prediction 721 743 - -
HCH12g0017 743 FunFam Wall-associated receptor kinase 2 483 701 - -
HCH12g0017 743 Pfam Protein kinase domain 407 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0017 743 SMART egfca_6 282 324 IPR001881 GO:0005509(InterPro)
HCH12g0017 743 ProSitePatterns Calcium-binding EGF-like domain signature. 282 306 IPR018097 GO:0005509(InterPro)
HCH12g0017 743 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
HCH12g0017 743 Gene3D Transferase(Phosphotransferase) domain 1 483 706 - -
HCH12g0017 743 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
HCH12g0017 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0017 743 Pfam Calcium-binding EGF domain 282 316 IPR049883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0017 HCH-Chr12:129051 HCH13g0173 HCH-Chr13:1166771 3.60E-194 dispersed
HCH12g0017 HCH-Chr12:129051 HCH12g1384 HCH-Chr12:35632093 3.60E-194 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81091 PF00069 Pkinase 4.60E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0017 - - - 0.0