Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0020 ATGGTGGCAGTGGCAATGGCGCTGTTTCAGCCACAGAGAATATCATCATCATCATCATCATTCTACGGCAGTTTCAAAGAATCCGGTTCACGTAGGAGCAGCGCCTCTAAACATAAAAACAAGAATTCTCGTTGCATAGCTTCGTGGCAGGAGCTTACTGGGGTTCTTATATTCTCCGCAATTCCCTTCACCGCTGTCAAAGCCATCGCCAATAGTCCACTCGGAGACTCCCTCCGGAGGCGAATGGAAATTACTAAAAAAGCTGCACTTTCCAACTCTTCCAACCTCAACGCTTTAGCTCAAAAGGCTAGAAAACAAAGTTCCTGGTATGGAGAAGAACGCCCTCGCTGGCTTGGTCCTATCCCATATGTCTATCCCAAATATCTCACGGGTGAACTGCCTGGTGATTACGGCTTTGATATTGCAGGCCTTGCCAAGGATCCTCTCTCTTTTCAGAACTACTTCAACTTTGAATTACTCCATGCTCGTTGGGCTATGTTAGCATCCCTCGGCGCTCTAATTCCTGAGATTCTCCATATTTCTGGGGCTTTTCATTTCACCGAACCCGTCTGGTGGCGAGTAGGCTATTCAAAGCTTAAGGGAGATACACTCGACTATCTTGGAATACCTGGACTTCATTTGGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCCTTTTAATGGTTGGACCTGAGTATGCAAGATATTGCGGCATAGAGGCATTAGAGCCTTTGGGAATATACCTGCCGGGCGATATTAATTATCCAGGAGGTGCATTGTTTGATCCGTTGAATTTGTCCAAGGATTCCGCAGGTTTTGAGGAACTGAAGGTGAAAGAGATAAAAAATGGGCGGTTAGCCATGGTTGCGTGGCTAGGATTTTACAGTCAAGCAGCATTAACAGGTAAAGGGCCGGTTGAAAACCTGCTGGAACATATATCAGATCCTTTCCACAATAACTTTCTATGTCTGCTCAACTCTTTGTAA 996 45.78 MVAVAMALFQPQRISSSSSSFYGSFKESGSRRSSASKHKNKNSRCIASWQELTGVLIFSAIPFTAVKAIANSPLGDSLRRRMEITKKAALSNSSNLNALAQKARKQSSWYGEERPRWLGPIPYVYPKYLTGELPGDYGFDIAGLAKDPLSFQNYFNFELLHARWAMLASLGALIPEILHISGAFHFTEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDSAGFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVENLLEHISDPFHNNFLCLLNSL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 146415 148808 - evm.model.ptg000002l.1639 HCH12g0020 554867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0020 331 Gene3D Chlorophyll a/b binding protein domain 116 327 - -
HCH12g0020 331 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 49 325 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
HCH12g0020 331 FunFam Chlorophyll a-b binding protein, chloroplastic 116 328 - -
HCH12g0020 331 Pfam Chlorophyll A-B binding protein 126 301 IPR022796 -
HCH12g0020 331 SUPERFAMILY Chlorophyll a-b binding protein 108 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0020 HCH-Chr12:146415 HCH7g0335 HCH-Chr7:2374643 1.40E-52 dispersed
HCH12g0020 HCH-Chr12:146415 HCH6g0711 HCH-Chr6:40515738 7.40E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0020 K14172 - csv:101209460 522.702