Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0026 ATGGAGAGTGGTAAAGTTTGTGTGACCGGAGCCGGAGGGTTTATTGCTTCCTGCCTCGTCAAGCTTTTGCTTTCCAGAAATTACTGTGTTCATGGAACTCTCAGGGAACCCCAGGATGCCAAGTATGCTCACTTGAGCAAACTTGAGAAATCAACTGAGAATCTGCAACTCTTTAAGGCTGACTTACTGGACTATCAGTCCCTGCACTCGGCCATTCAAGGATGTCATGGTGTTTTCCATGTTGCCTCTCCAGTTCCTTCCACCGTTTCATCGAACCCCGAGGTAGAATTGATTGAACCGGCTGTAAGGGGCACACTTAATGTGCTTCAAGCATGCATTGAAGCAAAAGTCAAACGAGTGGTGTTTGTATCCTCTGCTGCTGCGGTCCTTCTTAATCCAAGTTGGCCTCAAGGTCAAGTAATGAATGAAAGTTGTTGGTCTGATAAGGAATACTGCAGAGCTACACAGAATTGGTATTGTTATTCAAAAACAGAAGCTGAAAGTGAAGCCCTAGAGTTTGGGAGGAAAAGTGGGCTGGACGTTGTTTCTGTCTGTCCTACTCTTGTTCTGGGGCCAATTTTGCAGCCAACAGTGAACGCCAGTAGCTATGTTCTACTCAGGCTTCTTAAAGAAGGATGCGAGTCGCTGGAAAATAAGGTGCGTTTGTTAGTAGACGTTCGGGATGTAGCAGAGGCTCTGCTTCTGGTTTATGAGAAGGCTGAGGCGGAAGGGAGGTACATTTGCACAGCACATGCTATGGAGGCAAGGGATCTTGTGGAAATATTGAAGAAAAAGTACCCAGATTACAAGTATCCAAAGAAGTTCATTGAAGTGAAGAAGGAATCTATAGTGAGCTCGGAAAGGTTGCAAAGATTGGGTTGGAAGTATCGGCGGTTGGAAGAGACGCTTGAAGATGGTGTTGAGAGTTTTAGAGAAGGCGGATTGTTGGCATGA 954 45.81 MESGKVCVTGAGGFIASCLVKLLLSRNYCVHGTLREPQDAKYAHLSKLEKSTENLQLFKADLLDYQSLHSAIQGCHGVFHVASPVPSTVSSNPEVELIEPAVRGTLNVLQACIEAKVKRVVFVSSAAAVLLNPSWPQGQVMNESCWSDKEYCRATQNWYCYSKTEAESEALEFGRKSGLDVVSVCPTLVLGPILQPTVNASSYVLLRLLKEGCESLENKVRLLVDVRDVAEALLLVYEKAEAEGRYICTAHAMEARDLVEILKKKYPDYKYPKKFIEVKKESIVSSERLQRLGWKYRRLEETLEDGVESFREGGLLA 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 172021 174525 - evm.model.ptg000002l.1633 HCH12g0026 554873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0026 317 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 309 IPR050425 GO:0016616(PANTHER)
HCH12g0026 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 311 IPR036291 -
HCH12g0026 317 Gene3D - 1 317 - -
HCH12g0026 317 Pfam NAD dependent epimerase/dehydratase family 6 242 IPR001509 -
HCH12g0026 317 CDD FR_SDR_e 6 294 - -
HCH12g0026 317 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
HCH12g0026 317 FunFam NAD(P)-binding Rossmann-fold superfamily protein 1 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0026 HCH-Chr12:172021 HCH6g0289 HCH-Chr6:4083619 2.60E-77 dispersed
HCH12g0026 HCH-Chr12:172021 HCH4g1266 HCH-Chr4:8712495 4.60E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0026 - - - 0.0