Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0027 ATGGCTGGATACAACGAGCAACCTAATTCTCGTTATGTCCATCAATACCTACACCTCCAAAGCCCTTCCATCCCTCCTCTTATTGATCCCTTTAACAACCGCTCTGATCCAAATTCCAATTCCAAGGATTCCAATTCCCATTCCCCACAAAATCTTGATCACAGAACTAATAATGACTCCGCATCCGCCTTCCCGGTCACTTCTTCTGGTGCTCCAAACAGTTCCCTCCGACGCCCTCGAGGCCGTCCTCCTGGCTCCAAAAACAAGCCTAAACCGCCCATTATAGTCACCCGTGACAGCCCTAATGTCCTTGGTTCTCACGTTCTCGAAGTCACTGCTGGAGCCGACATCCTCGACAGTGTTTCTAACTATGCGAGACGAAGGGGTAGAGGTGTTTCCATCCTTAGCGGCACTGGTACTGTTTCTAATGTTACTTTGCGTCAACCTGCAGCTTCTCCTGCAGTCACTCTTCATGGAAGATTCGAGATTCTATCTCTCACTGGGACTGTGCTTCCTCCCCCAGCTCCCCCAGGAGCTGGCGGGCTTTCTATATTCTTGGCTGGTGCTCAAGGCCAAGTCGTCGGAGGTAGCGTACTGGCCCCATTGGTAGCTTCAGGCCCAGTGATTTTGATGGCAGCATCATTTTCAAACGCTGTGTTTGAGAGATTGCCTTCGGAAGAAGGAGAAGAAGAAGAAGAAGAAGGTGGTGTGCAAGTTCAGCCTACTGCATCACAATCATCTGGGGTTACCGGAGGTGGAGCTGGACAGATGACCGAGGGCGGTGGCGCTGTTCCTTTTTTAGGTATGGGAGGTAACAATATAGGTGGATACCCTTTTGCTGGAGATTTGTTTGGTTGGGGTGGAACTGGAAATGCATCAAAGCCTCACTTTTAG 894 50.11 MAGYNEQPNSRYVHQYLHLQSPSIPPLIDPFNNRSDPNSNSKDSNSHSPQNLDHRTNNDSASAFPVTSSGAPNSSLRRPRGRPPGSKNKPKPPIIVTRDSPNVLGSHVLEVTAGADILDSVSNYARRRGRGVSILSGTGTVSNVTLRQPAASPAVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGAQGQVVGGSVLAPLVASGPVILMAASFSNAVFERLPSEEGEEEEEEGGVQVQPTASQSSGVTGGGAGQMTEGGGAVPFLGMGGNNIGGYPFAGDLFGWGGTGNASKPHF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 178034 178927 + evm.model.ptg000002l.1632 HCH12g0027 554874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0027 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 228 - -
HCH12g0027 297 MobiDBLite consensus disorder prediction 238 253 - -
HCH12g0027 297 MobiDBLite consensus disorder prediction 1 99 - -
HCH12g0027 297 PIRSF ESCAROLA 27 296 IPR014476 GO:0003680(InterPro)
HCH12g0027 297 FunFam AT-hook motif nuclear-localized protein 104 233 - -
HCH12g0027 297 Gene3D - 106 234 - -
HCH12g0027 297 MobiDBLite consensus disorder prediction 26 75 - -
HCH12g0027 297 CDD DUF296 107 215 IPR005175 -
HCH12g0027 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 216 IPR005175 -
HCH12g0027 297 MobiDBLite consensus disorder prediction 1 17 - -
HCH12g0027 297 MobiDBLite consensus disorder prediction 223 257 - -
HCH12g0027 297 ProSiteProfiles PPC domain profile profile. 101 236 IPR005175 -
HCH12g0027 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 257 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0027 HCH-Chr12:178034 HCH13g1201 HCH-Chr13:39302289 7.40E-58 dispersed
HCH12g0027 HCH-Chr12:178034 HCH12g0036 HCH-Chr12:209010 5.50E-21 proximal
HCH12g0027 HCH-Chr12:178034 HCH7g0375 HCH-Chr7:2698268 1.90E-34 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0027 - - - 0.0