Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0028 ATGGATGATTGCGAAAAGTCAGGAGAGGACGACATTCTTCTTCCTCAAACCCATGAACCACAATCTTCTACATTGATGTTGTTGTCTAACCACGATCACAACAACAACGATATTCTTATCACTTCTGCTCCTCAGGATCATGTTTCTGTTTCTGAAGCTGCACCACCACTCCCCATTTCTTCTCATCATCCAATTCATCAATATAATAATGCATGGACTGATATTCAACTGGCTCAAGCTAATGAATCAGGCACGCCAGAGGAGAGGGTCGACTTTATGAAAGAGCTCGAGAATTTCCATAGAGATAAAGCTTTGGACTTCAAGCCCCCTAAATTTTACGGGGAGCAACTCAATTGTTTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGAACTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACGTGCACAACAGTCTCTTGGACATTCCGCATTTTTTATGAGAAGGCACTTCTAGAATATGAAAAGCATAAAACGCTGATTGGTGAACTTCAACTCCCTGTTGGATCCCTTTCGCAGTCTACAAATATTGAAAAAGAGACTAGCAGTTACCAAGCTCCTGGATCAGGTAGGGCACGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTCTTGGACATGGTGAGGTTGCCGAGCCTATTATTAAGGACAAGAACTTGAGTTCTACACCAAAGCGTGAAAAGAATCTAAAAAATATTGGTTTGGTAAAACACAAGATGCCATCCAATACCGAGCATGCTGGCAGAGAGGCAGATTTTGAATCAGATAAGCAAGTGAACTCAACAATCATGGATATTGGACCTCCAGCTGATTGGGTCAAGATTAATGTTCGTGAGACGAATGATTGCTTTGAAGTATATGCATTGGTTCCAGGGCTTTTACGGGAGGAGGTACGAGTTCAATCTGATCCAGCTGGACGTCTGGTTATTACGGGTCAACCTGAGCATATCGATAATCCTTGGGGCATCACACCTTTCAAAAAGGTGGTGAGCTTACCTGCGAGAATTGATCCTCTTCAAACATCTGCTGTTGTCAGCCTGCATGGCCGACTCCTTGTGCGAGTCCCTTTTGAGCAAGGATCCATGTGA 1158 44.21 MDDCEKSGEDDILLPQTHEPQSSTLMLLSNHDHNNNDILITSAPQDHVSVSEAAPPLPISSHHPIHQYNNAWTDIQLAQANESGTPEERVDFMKELENFHRDKALDFKPPKFYGEQLNCLKLWRAVIRLGGYELVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKTLIGELQLPVGSLSQSTNIEKETSSYQAPGSGRARRDAAARAMQGWHAQRLLGHGEVAEPIIKDKNLSSTPKREKNLKNIGLVKHKMPSNTEHAGREADFESDKQVNSTIMDIGPPADWVKINVRETNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEHIDNPWGITPFKKVVSLPARIDPLQTSAVVSLHGRLLVRVPFEQGSM 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 182160 185944 - evm.model.ptg000002l.1631 HCH12g0028 554875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0028 385 Pfam Hsp20/alpha crystallin family 301 381 IPR002068 -
HCH12g0028 385 ProSiteProfiles ARID domain profile. 86 177 IPR001606 GO:0003677(InterPro)
HCH12g0028 385 FunFam AT-rich interactive domain-containing protein 3 276 384 - -
HCH12g0028 385 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 42 382 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
HCH12g0028 385 Gene3D - 275 384 IPR008978 -
HCH12g0028 385 Gene3D - 87 182 IPR036431 GO:0003677(InterPro)
HCH12g0028 385 FunFam AT-rich interactive domain-containing protein 3 86 185 - -
HCH12g0028 385 SUPERFAMILY ARID-like 77 181 IPR036431 GO:0003677(InterPro)
HCH12g0028 385 CDD ARID 88 173 - -
HCH12g0028 385 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 284 385 IPR002068 -
HCH12g0028 385 SMART ARID_2 83 173 - -
HCH12g0028 385 SUPERFAMILY HSP20-like chaperones 292 380 IPR008978 -
HCH12g0028 385 Pfam ARID/BRIGHT DNA binding domain 89 173 IPR001606 GO:0003677(InterPro)
HCH12g0028 385 CDD ACD_sHsps-like 299 379 - -
HCH12g0028 385 SMART bright_3 87 178 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0028 HCH-Chr12:182160 HCH13g1287 HCH-Chr13:40887592 3.20E-122 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32638 PF00011 HSP20 6.00E-05 CL0190 HCH TR