Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0028 ATGGATGATTGCGAAAAGTCAGGAGAGGACGACATTCTTCTTCCTCAAACCCATGAACCACAATCTTCTACATTGATGTTGTTGTCTAACCACGATCACAACAACAACGATATTCTTATCACTTCTGCTCCTCAGGATCATGTTTCTGTTTCTGAAGCTGCACCACCACTCCCCATTTCTTCTCATCATCCAATTCATCAATATAATAATGCATGGACTGATATTCAACTGGCTCAAGCTAATGAATCAGGCACGCCAGAGGAGAGGGTCGACTTTATGAAAGAGCTCGAGAATTTCCATAGAGATAAAGCTTTGGACTTCAAGCCCCCTAAATTTTACGGGGAGCAACTCAATTGTTTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGAACTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACGTGCACAACAGTCTCTTGGACATTCCGCATTTTTTATGAGAAGGCACTTCTAGAATATGAAAAGCATAAAACGCTGATTGGTGAACTTCAACTCCCTGTTGGATCCCTTTCGCAGTCTACAAATATTGAAAAAGAGACTAGCAGTTACCAAGCTCCTGGATCAGGTAGGGCACGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTCTTGGACATGGTGAGGTTGCCGAGCCTATTATTAAGGACAAGAACTTGAGTTCTACACCAAAGCGTGAAAAGAATCTAAAAAATATTGGTTTGGTAAAACACAAGATGCCATCCAATACCGAGCATGCTGGCAGAGAGGCAGATTTTGAATCAGATAAGCAAGTGAACTCAACAATCATGGATATTGGACCTCCAGCTGATTGGGTCAAGATTAATGTTCGTGAGACGAATGATTGCTTTGAAGTATATGCATTGGTTCCAGGGCTTTTACGGGAGGAGGTACGAGTTCAATCTGATCCAGCTGGACGTCTGGTTATTACGGGTCAACCTGAGCATATCGATAATCCTTGGGGCATCACACCTTTCAAAAAGGTGGTGAGCTTACCTGCGAGAATTGATCCTCTTCAAACATCTGCTGTTGTCAGCCTGCATGGCCGACTCCTTGTGCGAGTCCCTTTTGAGCAAGGATCCATGTGA 1158 44.21 MDDCEKSGEDDILLPQTHEPQSSTLMLLSNHDHNNNDILITSAPQDHVSVSEAAPPLPISSHHPIHQYNNAWTDIQLAQANESGTPEERVDFMKELENFHRDKALDFKPPKFYGEQLNCLKLWRAVIRLGGYELVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKTLIGELQLPVGSLSQSTNIEKETSSYQAPGSGRARRDAAARAMQGWHAQRLLGHGEVAEPIIKDKNLSSTPKREKNLKNIGLVKHKMPSNTEHAGREADFESDKQVNSTIMDIGPPADWVKINVRETNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEHIDNPWGITPFKKVVSLPARIDPLQTSAVVSLHGRLLVRVPFEQGSM 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 182160 185944 - evm.model.ptg000002l.1631 HCH12g0028 554875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0028 385 Pfam Hsp20/alpha crystallin family 301 381 IPR002068 -
HCH12g0028 385 ProSiteProfiles ARID domain profile. 86 177 IPR001606 GO:0003677(InterPro)
HCH12g0028 385 FunFam AT-rich interactive domain-containing protein 3 276 384 - -
HCH12g0028 385 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 42 382 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
HCH12g0028 385 Gene3D - 275 384 IPR008978 -
HCH12g0028 385 Gene3D - 87 182 IPR036431 GO:0003677(InterPro)
HCH12g0028 385 FunFam AT-rich interactive domain-containing protein 3 86 185 - -
HCH12g0028 385 SUPERFAMILY ARID-like 77 181 IPR036431 GO:0003677(InterPro)
HCH12g0028 385 CDD ARID 88 173 - -
HCH12g0028 385 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 284 385 IPR002068 -
HCH12g0028 385 SMART ARID_2 83 173 - -
HCH12g0028 385 SUPERFAMILY HSP20-like chaperones 292 380 IPR008978 -
HCH12g0028 385 Pfam ARID/BRIGHT DNA binding domain 89 173 IPR001606 GO:0003677(InterPro)
HCH12g0028 385 CDD ACD_sHsps-like 299 379 - -
HCH12g0028 385 SMART bright_3 87 178 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0028 HCH-Chr12:182160 HCH13g1287 HCH-Chr13:40887592 3.20E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32638 PF00011 HSP20 6.00E-05 CL0190 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0028 - - - 0.0