Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0031 ATGGAGAAAGGGGGATCGATTCCAGAAGTTGTATCAGCGATGGACGCGTTCGAGAAACTGGAGAAGGTTGGTGAAGGAACTTATGGGAAAGTGTATCGGGCTAGAGAGAAAGCTACTGGAAAAATCGTTGCTTTGAAGAAGACACGTCTCCATGAAGATGAAGAAGGTGTTCCTCCCACCACTCTTCGTGAGGTTTCTATTCTTCGAATGCTTTCTAGGGATCCTCATATTGTCAGGTTGATGGACGTGAAACAAGCGCAAAATAAGGAAGGGAAAACAGTTCTTTACTTGGTGTTTGAATACATGGATACCGATCTTAAGAAATTCATCAGGAGTTTCCGTCCATCTGGACAAACCATTCCCCCCAACACTGTCAAGAATTTGATGTTCCAACTCTGTAAGGGCGTTGCCTTCTGCCATGGTCATGGTATCCTTCATAGGGACCTCAAACCCCACAATCTCCTCATGGATCGAAAGACCATGATGCTTAAAATTGCAGATCTTGGTCTTGCTCGTGCTTTTACGGTCCCAATTAAAAAGTATACTCACGAGATACTCACCCTTTGGTATAGAGCTCCTGAAGTTCTGTTGGGGGCCACTCATTACTCCACTGCTGTTGATATGTGGTCTGTTGCCTGTATCTTTGCCGAGCTAGTTACAGGCCAAGCACTCTTCCCTGGAGATTCTGAATTGCAACAGCTCCTTCATATCTTTAGGCTATTAGGAACTCCAAATGAAGTAATTTGGCCAGGTGTAAGCCAACTAATGAATTGGCATGAGTATCCCCAGTGGAGCACTCAGAGTGTATCAACAGTCGTTCCTACCTTGGATGATAAAGGGATTGATCTCCTTACACAAATGTTGCAGTATGAACCCTCGAAGCGTATTTCAGCAAAGAAAGCTATGGAACATCCTTATTTTGATGATTTGAACAAGACATATCTCTGA 948 43.88 MEKGGSIPEVVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQAQNKEGKTVLYLVFEYMDTDLKKFIRSFRPSGQTIPPNTVKNLMFQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELVTGQALFPGDSELQQLLHIFRLLGTPNEVIWPGVSQLMNWHEYPQWSTQSVSTVVPTLDDKGIDLLTQMLQYEPSKRISAKKAMEHPYFDDLNKTYL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 197756 199190 - evm.model.ptg000002l.1628 HCH12g0031 554878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0031 315 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524(InterPro)
HCH12g0031 315 Pfam Protein kinase domain 17 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0031 315 PANTHER CELL DIVISION PROTEIN KINASE 17 307 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
HCH12g0031 315 FunFam Cyclin-dependent kinase 2 105 314 - -
HCH12g0031 315 Gene3D Phosphorylase Kinase; domain 1 12 103 - -
HCH12g0031 315 ProSiteProfiles Protein kinase domain profile. 17 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0031 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0031 315 SMART serkin_6 17 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0031 315 Gene3D Transferase(Phosphotransferase) domain 1 105 314 - -
HCH12g0031 315 SUPERFAMILY Protein kinase-like (PK-like) 12 311 IPR011009 -
HCH12g0031 315 FunFam Cyclin-dependent kinase B2,2 13 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0031 HCH-Chr12:197756 HCH9g0868 HCH-Chr9:6216658 2.90E-121 dispersed
HCH12g0031 HCH-Chr12:197756 HCH1g1131 HCH-Chr1:58817114 1.50E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81092 PF00069 Pkinase 3.10E-72 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0031 K07760 - csv:101208001 578.556