Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0031 | ATGGAGAAAGGGGGATCGATTCCAGAAGTTGTATCAGCGATGGACGCGTTCGAGAAACTGGAGAAGGTTGGTGAAGGAACTTATGGGAAAGTGTATCGGGCTAGAGAGAAAGCTACTGGAAAAATCGTTGCTTTGAAGAAGACACGTCTCCATGAAGATGAAGAAGGTGTTCCTCCCACCACTCTTCGTGAGGTTTCTATTCTTCGAATGCTTTCTAGGGATCCTCATATTGTCAGGTTGATGGACGTGAAACAAGCGCAAAATAAGGAAGGGAAAACAGTTCTTTACTTGGTGTTTGAATACATGGATACCGATCTTAAGAAATTCATCAGGAGTTTCCGTCCATCTGGACAAACCATTCCCCCCAACACTGTCAAGAATTTGATGTTCCAACTCTGTAAGGGCGTTGCCTTCTGCCATGGTCATGGTATCCTTCATAGGGACCTCAAACCCCACAATCTCCTCATGGATCGAAAGACCATGATGCTTAAAATTGCAGATCTTGGTCTTGCTCGTGCTTTTACGGTCCCAATTAAAAAGTATACTCACGAGATACTCACCCTTTGGTATAGAGCTCCTGAAGTTCTGTTGGGGGCCACTCATTACTCCACTGCTGTTGATATGTGGTCTGTTGCCTGTATCTTTGCCGAGCTAGTTACAGGCCAAGCACTCTTCCCTGGAGATTCTGAATTGCAACAGCTCCTTCATATCTTTAGGCTATTAGGAACTCCAAATGAAGTAATTTGGCCAGGTGTAAGCCAACTAATGAATTGGCATGAGTATCCCCAGTGGAGCACTCAGAGTGTATCAACAGTCGTTCCTACCTTGGATGATAAAGGGATTGATCTCCTTACACAAATGTTGCAGTATGAACCCTCGAAGCGTATTTCAGCAAAGAAAGCTATGGAACATCCTTATTTTGATGATTTGAACAAGACATATCTCTGA | 948 | 43.88 | MEKGGSIPEVVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQAQNKEGKTVLYLVFEYMDTDLKKFIRSFRPSGQTIPPNTVKNLMFQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELVTGQALFPGDSELQQLLHIFRLLGTPNEVIWPGVSQLMNWHEYPQWSTQSVSTVVPTLDDKGIDLLTQMLQYEPSKRISAKKAMEHPYFDDLNKTYL | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 197756 | 199190 | - | evm.model.ptg000002l.1628 | HCH12g0031 | 554878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0031 | 315 | ProSitePatterns | Protein kinases ATP-binding region signature. | 23 | 46 | IPR017441 | GO:0005524(InterPro) | |
HCH12g0031 | 315 | Pfam | Protein kinase domain | 17 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0031 | 315 | PANTHER | CELL DIVISION PROTEIN KINASE | 17 | 307 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER) | |
HCH12g0031 | 315 | FunFam | Cyclin-dependent kinase 2 | 105 | 314 | - | - | |
HCH12g0031 | 315 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 103 | - | - | |
HCH12g0031 | 315 | ProSiteProfiles | Protein kinase domain profile. | 17 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0031 | 315 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0031 | 315 | SMART | serkin_6 | 17 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0031 | 315 | Gene3D | Transferase(Phosphotransferase) domain 1 | 105 | 314 | - | - | |
HCH12g0031 | 315 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 311 | IPR011009 | - | |
HCH12g0031 | 315 | FunFam | Cyclin-dependent kinase B2,2 | 13 | 103 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0031 | HCH-Chr12:197756 | HCH9g0868 | HCH-Chr9:6216658 | 2.90E-121 | dispersed | |
HCH12g0031 | HCH-Chr12:197756 | HCH1g1131 | HCH-Chr1:58817114 | 1.50E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81092 | PF00069 | Pkinase | 3.10E-72 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0031 | K07760 | - | csv:101208001 | 578.556 |