Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0036 ATGTCGGGATCTGAGACGATGACTAATAGTAATGGTGAAGGGTTCAGCATAAGCCTTCAGAAGAATTCTGTAGAATCACAGATGCATTTACCGTTGGGTTCTGACGGAACAATCATCTACAAACCCCTCGCCGCCTCACCACCACCACCACCACTCTACCACCCTTCCGCTCCTGATGAAGCTGTTGGAATTCATGGTCTTAATATTAACATGCATACCCTTAACGAGCATCCTTTAAAGAGGAAGAGAGGGAGACCGAGAAAGTATGGTCCAGATGGCGGTATCCCATTGCCTCTTACTCCTCCCCCTTCTTCTGCTTCACCACTTGCAGTTCCTTCCTCTCATGGACCAGCTTCACCAACTTCTTTGAAGAAACCCAGAGGCAGACCACCTGGCTCTAGCAAAAAACACCATTTTCATCATCCTTTGCCTAACTCTGGGTCCTCGTCTGCAGGAGTTGGATTTACCCCACATGTCATCACTGTGCAAGCTGGCGAGGATGTGTCTTCAAAAATAATGTCATTTTCACAAAATGGTCCTAGGGCTGTTTGTATCCTTACAGCAAATGGAGCAATTTCTAATGTGACTCTACGTCAACCAGCGATGTCTGGTGGAACTGTGACTTATGAGGGCCGATTTGAGATTTTGTCACTTTCGGGGTCATATCTCCTCTCTGAAAACGGTGGTCAACGAAGTAGAACTGGGGGTTTAAGTGTTTCATTATCTGGTCCAGATGGTAGAGTATTAGGGGGCGGAGTTGCTGGTCTTCTAACAGCTGCAGCTCCTGTTCAGGTAGTGGTAGGGAGTTTCATGGCTGATGGGAGCAAGGAAATGAAACCAGCAAACCAAATTGAATATCCTGCAGTCACAGCACCACCGAAACTTGCTCCCATTCGTGCTGGAACAACCGGGGCCAGCAGCCCACCATCACGTGGAACTCTTAGTGAATCCTCAGGCGGGCCGGGGAGTCCGTTCAATAACAGTAATCCACAAGGCATGACGACCATACAGTGGAAATGA 1020 48.14 MSGSETMTNSNGEGFSISLQKNSVESQMHLPLGSDGTIIYKPLAASPPPPPLYHPSAPDEAVGIHGLNINMHTLNEHPLKRKRGRPRKYGPDGGIPLPLTPPPSSASPLAVPSSHGPASPTSLKKPRGRPPGSSKKHHFHHPLPNSGSSSAGVGFTPHVITVQAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAAAPVQVVVGSFMADGSKEMKPANQIEYPAVTAPPKLAPIRAGTTGASSPPSRGTLSESSGGPGSPFNNSNPQGMTTIQWK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 209010 211422 - evm.model.ptg000002l.1623 HCH12g0036 554883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0036 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 324 IPR039605 GO:0003680(InterPro)
HCH12g0036 339 FunFam AT-hook motif nuclear-localized protein 1-like 157 286 - -
HCH12g0036 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
HCH12g0036 339 MobiDBLite consensus disorder prediction 295 339 - -
HCH12g0036 339 SMART AT_hook_2 80 92 IPR017956 GO:0003677(InterPro)
HCH12g0036 339 SMART AT_hook_2 124 136 IPR017956 GO:0003677(InterPro)
HCH12g0036 339 CDD DUF296 156 270 IPR005175 -
HCH12g0036 339 Gene3D - 157 289 - -
HCH12g0036 339 MobiDBLite consensus disorder prediction 1 20 - -
HCH12g0036 339 ProSiteProfiles PPC domain profile profile. 151 292 IPR005175 -
HCH12g0036 339 MobiDBLite consensus disorder prediction 73 154 - -
HCH12g0036 339 MobiDBLite consensus disorder prediction 303 339 - -
HCH12g0036 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0036 HCH-Chr12:209010 HCH4g0865 HCH-Chr4:5539854 1.00E-92 dispersed
HCH12g0027 HCH-Chr12:178034 HCH12g0036 HCH-Chr12:209010 5.50E-21 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0036 - - - 0.0