Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0036 | ATGTCGGGATCTGAGACGATGACTAATAGTAATGGTGAAGGGTTCAGCATAAGCCTTCAGAAGAATTCTGTAGAATCACAGATGCATTTACCGTTGGGTTCTGACGGAACAATCATCTACAAACCCCTCGCCGCCTCACCACCACCACCACCACTCTACCACCCTTCCGCTCCTGATGAAGCTGTTGGAATTCATGGTCTTAATATTAACATGCATACCCTTAACGAGCATCCTTTAAAGAGGAAGAGAGGGAGACCGAGAAAGTATGGTCCAGATGGCGGTATCCCATTGCCTCTTACTCCTCCCCCTTCTTCTGCTTCACCACTTGCAGTTCCTTCCTCTCATGGACCAGCTTCACCAACTTCTTTGAAGAAACCCAGAGGCAGACCACCTGGCTCTAGCAAAAAACACCATTTTCATCATCCTTTGCCTAACTCTGGGTCCTCGTCTGCAGGAGTTGGATTTACCCCACATGTCATCACTGTGCAAGCTGGCGAGGATGTGTCTTCAAAAATAATGTCATTTTCACAAAATGGTCCTAGGGCTGTTTGTATCCTTACAGCAAATGGAGCAATTTCTAATGTGACTCTACGTCAACCAGCGATGTCTGGTGGAACTGTGACTTATGAGGGCCGATTTGAGATTTTGTCACTTTCGGGGTCATATCTCCTCTCTGAAAACGGTGGTCAACGAAGTAGAACTGGGGGTTTAAGTGTTTCATTATCTGGTCCAGATGGTAGAGTATTAGGGGGCGGAGTTGCTGGTCTTCTAACAGCTGCAGCTCCTGTTCAGGTAGTGGTAGGGAGTTTCATGGCTGATGGGAGCAAGGAAATGAAACCAGCAAACCAAATTGAATATCCTGCAGTCACAGCACCACCGAAACTTGCTCCCATTCGTGCTGGAACAACCGGGGCCAGCAGCCCACCATCACGTGGAACTCTTAGTGAATCCTCAGGCGGGCCGGGGAGTCCGTTCAATAACAGTAATCCACAAGGCATGACGACCATACAGTGGAAATGA | 1020 | 48.14 | MSGSETMTNSNGEGFSISLQKNSVESQMHLPLGSDGTIIYKPLAASPPPPPLYHPSAPDEAVGIHGLNINMHTLNEHPLKRKRGRPRKYGPDGGIPLPLTPPPSSASPLAVPSSHGPASPTSLKKPRGRPPGSSKKHHFHHPLPNSGSSSAGVGFTPHVITVQAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAAAPVQVVVGSFMADGSKEMKPANQIEYPAVTAPPKLAPIRAGTTGASSPPSRGTLSESSGGPGSPFNNSNPQGMTTIQWK | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 209010 | 211422 | - | evm.model.ptg000002l.1623 | HCH12g0036 | 554883 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0036 | 339 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 55 | 324 | IPR039605 | GO:0003680(InterPro) | |
HCH12g0036 | 339 | FunFam | AT-hook motif nuclear-localized protein 1-like | 157 | 286 | - | - | |
HCH12g0036 | 339 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 157 | 270 | IPR005175 | - | |
HCH12g0036 | 339 | MobiDBLite | consensus disorder prediction | 295 | 339 | - | - | |
HCH12g0036 | 339 | SMART | AT_hook_2 | 80 | 92 | IPR017956 | GO:0003677(InterPro) | |
HCH12g0036 | 339 | SMART | AT_hook_2 | 124 | 136 | IPR017956 | GO:0003677(InterPro) | |
HCH12g0036 | 339 | CDD | DUF296 | 156 | 270 | IPR005175 | - | |
HCH12g0036 | 339 | Gene3D | - | 157 | 289 | - | - | |
HCH12g0036 | 339 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
HCH12g0036 | 339 | ProSiteProfiles | PPC domain profile profile. | 151 | 292 | IPR005175 | - | |
HCH12g0036 | 339 | MobiDBLite | consensus disorder prediction | 73 | 154 | - | - | |
HCH12g0036 | 339 | MobiDBLite | consensus disorder prediction | 303 | 339 | - | - | |
HCH12g0036 | 339 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 155 | 272 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0036 | HCH-Chr12:209010 | HCH4g0865 | HCH-Chr4:5539854 | 1.00E-92 | dispersed | |
HCH12g0027 | HCH-Chr12:178034 | HCH12g0036 | HCH-Chr12:209010 | 5.50E-21 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0036 | - | - | - | 0.0 |