Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0043 ATGCGTCCGTTTAGGTACCTGAGCGGTGTGAATTCCTCGGCGATCGCCGATTCCACCGAAAGCCAAAGATACGATTCCGATTTCGTAATAATCCTGGCAGCCTTACTATGTGCCTTAATCTGCGTTCTCGGTCTGGTTGCTGTTGCTCGTTGTGCCTGGATACGTCATCTCTCCGCCGATTCCAGCAATTCCAATTCAAATCCTCCACCTCCACCTCCTTCTTCCAACAAAGGTCTGAAGAAAAAGATCCTTAGGTCTCTCCCTAAACAAACCTTCACTTCTCAATTCTCTTCTCAATTCTCAGATTGCGCCATCTGCCTCACTGATTTCACCATCGGTGATGAAATCCGATCTCTTCCCCAGTGTGGACATGGCTTCCACGTGGCCTGCATCGATACCTGGTTCCGATCTCACTCTTCATGTCCTTCCTGCCGTCAGATTCTTGTGGTGACTCAGTGCCACAAGTGTGGTGGTTTTCCGGCGAGCTCGAGTTCGAATGTTGGCGTAAAGGAAGGAGAAGATAAGACGAATAGGTTTTTACCTTAA 546 48.72 MRPFRYLSGVNSSAIADSTESQRYDSDFVIILAALLCALICVLGLVAVARCAWIRHLSADSSNSNSNPPPPPPSSNKGLKKKILRSLPKQTFTSQFSSQFSDCAICLTDFTIGDEIRSLPQCGHGFHVACIDTWFRSHSSCPSCRQILVVTQCHKCGGFPASSSSNVGVKEGEDKTNRFLP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 233173 233718 - evm.model.ptg000002l.1616 HCH12g0043 554890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0043 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
HCH12g0043 181 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
HCH12g0043 181 MobiDBLite consensus disorder prediction 59 79 - -
HCH12g0043 181 SUPERFAMILY RING/U-box 86 150 - -
HCH12g0043 181 SMART ring_2 103 144 IPR001841 -
HCH12g0043 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 161 IPR052788 -
HCH12g0043 181 Pfam Ring finger domain 102 145 IPR001841 -
HCH12g0043 181 CDD RING-H2_EL5-like 102 145 - -
HCH12g0043 181 MobiDBLite consensus disorder prediction 162 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0043 HCH-Chr12:233173 HCH2g0191 HCH-Chr2:18917349 6.50E-25 dispersed
HCH12g0043 HCH-Chr12:233173 HCH13g1292 HCH-Chr13:40915909 1.70E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0043 - - - 0.0