Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0047 ATGAAGATGAGTTTGATTGGGCTTCTTTCACTGTTGTCTCTCTATTCTGGTGTTTTCCCAATTGTGTTTAGCAAGAACATTTCTTCTACTTCTTCAAGACCATCTGTTGTGAATATTGGAGCTATTTTTGCATTTGAATCTACTATTGGAAAAGTTGCTAAGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCTGATCCCACTATCCTTCCTGGAACAACCCTTCGGTTACAAATGCAAAATTCTAACTGCAGTGGGTTTCTGGGGATGGTTGAAGTATTGCAACTTATGGAGAATGATACGGTTGCCATCGTAGGCCCTCAATCTTCTGTGGTTGCACATATTGCATCCCAGGTTGCTAGTGAACTCCAAGTCCCCTTAGTGTCATTTGCAGCGACAGATCCCACTCTATCCGCCCTTCAGTTCCCCTTCTTTGTGAGGGCTGCTCAGAGTGATTTGTTTCAAATGGCTGCAGTTACTGAGATTATTGACTATTATGGTTGGAAGGAGGTTATTGCTATTTACATTGATGATGACTATGGGTGGAATGGTATTGCAGCATTAGATGATAAACTTGCAGAGAGGCGCTGTAAGATCTCATATAAGGTAGGTATTAATCCAAAATCCGTGTTCAATCGAGGTGATATTATGGATCGTCTTATTAAGGTTGCACTAATGGAATCTAGAGTTATGGTCCTCCATGTGAATCCAAATTTAGGTTTTTTAGTCTTTTCAGTGGCACAATACCTTGGAATGATGAGTAATGGATATGTATGGATAGCTACTGATTGGCTTTCTTCTGCATTAGATAGTACTTTACCTCTTCCTCCTGAGACCATGGATTCAATGCAAGGAGTTCTTTCTTTACGCCAGCACACACCAGATTCAGATAGAAAGAAAGCCTTTCTTTCCAGGTGGAACAAGTTAACTGGCCGTTCTTTGGGTTTGAATTCTTATGGGCTATATGCTTATGATTCTGTTTGGCTGGTTGCCCATGCCATCAACAATTTTTTTGATCAAGGTGGGATTATTTCACGTTCTAATGATTCCAGGCTAAATTCCAGTGATAGTGGCAATCTTCATCTTGAAGCAATGACTATCTTGGATGGTGGAAATCATCTGCTGAAGAACATATTGGAGAGTGACTTTGTTGGTTTGACTGGTGCCATTAAGTTTGATTATCAAAGATCTCTTCTTCACCCTGCCTATGATATCATTAATGTAATTGGGTCTGGATCTAGAAGGGTTGGTTATTGGTCCAATTATTCTGGTTTATCGGTTGATACTCCTGAGACATTCTATGATAAACCGTCTAATCGTTCAGCGGCAAATCAGAAGCTCTACGATGTTATATGGCCCGGAAACACATTAGCAACGCCTCGAGGATGGGTTTTCCCGAACAACGGGAAGCTACTAAATATTGGAGTACCTATTCGGGTCGGTTTCAAGGAATTTGTATCACAAGTCAAAGGAACTGACAATTTCAAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCTGTCCCACACCGATTTATCCCCTTTGGAGATGGCCATAAGAACCCAAATTACTCAGAACTTGTGCATCTGATTACAACTGGCAAATTTGATGCTGTTGTGGGAGATATTGCCATAGTCACAAGCCGTACAAAGATTGTGGATTTTACTCTGCCATATACTGCTTCTGGATTAGTTGTTGTGGCACCTTTCAGAAAGCTGAATACTGGTGCTTGGGCCTTCCTGCATCCATTCTCTCCAGCCATGTGGATTGTCACTGCTTCTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATCGGACAAACGATGAATTCAGAGGCCCACCCAAAAGACAATTTATTACAATTTTATGGTTTAGCTTCTCAACACTATTCTTCGCCCATAGAGAGAACACAATTAGCACTCTAGGTCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTCTGATAGTTAATTCTAGCTACACTGCCAGTCTAACATCCATTCTAACAGTGCAGAAGCTATATTCTCCCATTACTGGAATCGAAACCTTGAGAAAAATGAATGAACGAATAGGTTTCCAAGTTGGATCTTTTGCTGAACATTATTTGACTGAGGAGCTTAATATATCTGAATCTAGGCTTGTTCCTCTTGGATCACCTGAAGAATATGCAAAGGCACTTGACCTTGGTCCTGAGAAGGGAGGTGTTGCTGCTATAGTTGATGAACTTCCATATGTTGAAATTTTCCTCTCAAGACAGTGCACATTCAGAGTTGTTGGTCAAGAATTCACCAAAAGTGGATGGGGTTTTGCATTTCAGCGCGACTCTCCCTTGGCAGTTGACATGTCAACTGCCATTCTGCAGCTGTCTGAGAATGGTGATCTACAACGGATTCATGACAAATGGTTAGTGAGAAGTGCTTGCAGCTTGGACAATGCAGAACTCGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTCTTTCTAATTTGTGGGATAGTCTGCTTCTTTGCTCTGGTCATATACTGCTTTCAGATTATTCGTCAGTTGCGCAATTCCGCTTCTGAAGGATCTGATACTAAGTGCCTTGGACAAATTATGTCAATATTGGATGCGAAGGAAGATCCTTCTAAAAAGGATAGCAAAAGAAGGAAGGTGGAGAAATCATCTCAAAACGACAAGGATGATAATTTGGAGGAAAATCCTCAAGAGAGGCTTGGCATACAGAAATGA 2766 41.14 MKMSLIGLLSLLSLYSGVFPIVFSKNISSTSSRPSVVNIGAIFAFESTIGKVAKIAIEEAVKDVNADPTILPGTTLRLQMQNSNCSGFLGMVEVLQLMENDTVAIVGPQSSVVAHIASQVASELQVPLVSFAATDPTLSALQFPFFVRAAQSDLFQMAAVTEIIDYYGWKEVIAIYIDDDYGWNGIAALDDKLAERRCKISYKVGINPKSVFNRGDIMDRLIKVALMESRVMVLHVNPNLGFLVFSVAQYLGMMSNGYVWIATDWLSSALDSTLPLPPETMDSMQGVLSLRQHTPDSDRKKAFLSRWNKLTGRSLGLNSYGLYAYDSVWLVAHAINNFFDQGGIISRSNDSRLNSSDSGNLHLEAMTILDGGNHLLKNILESDFVGLTGAIKFDYQRSLLHPAYDIINVIGSGSRRVGYWSNYSGLSVDTPETFYDKPSNRSAANQKLYDVIWPGNTLATPRGWVFPNNGKLLNIGVPIRVGFKEFVSQVKGTDNFKGFCIDVFTAAVNLLPYAVPHRFIPFGDGHKNPNYSELVHLITTGKFDAVVGDIAIVTSRTKIVDFTLPYTASGLVVVAPFRKLNTGAWAFLHPFSPAMWIVTASFFLFIGIVVWILEHRTNDEFRGPPKRQFITILWFSFSTLFFAHRENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQKLYSPITGIETLRKMNERIGFQVGSFAEHYLTEELNISESRLVPLGSPEEYAKALDLGPEKGGVAAIVDELPYVEIFLSRQCTFRVVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQRIHDKWLVRSACSLDNAELESDRLQLKSFWGLFLICGIVCFFALVIYCFQIIRQLRNSASEGSDTKCLGQIMSILDAKEDPSKKDSKRRKVEKSSQNDKDDNLEENPQERLGIQK 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 243662 247382 - evm.model.ptg000002l.1612 HCH12g0047 554894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0047 921 Gene3D - 55 401 - -
HCH12g0047 921 Pfam Ligand-gated ion channel 814 845 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH12g0047 921 SMART GluR_14 474 815 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH12g0047 921 FunFam Glutamate receptor 468 584 - -
HCH12g0047 921 CDD PBP1_GABAb_receptor_plant 38 428 IPR044440 -
HCH12g0047 921 Gene3D - 582 722 - -
HCH12g0047 921 SUPERFAMILY Periplasmic binding protein-like II 451 815 - -
HCH12g0047 921 FunFam Glutamate receptor 152 311 - -
HCH12g0047 921 SUPERFAMILY Periplasmic binding protein-like I 31 465 IPR028082 -
HCH12g0047 921 Gene3D - 152 426 - -
HCH12g0047 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 895 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH12g0047 921 MobiDBLite consensus disorder prediction 884 921 - -
HCH12g0047 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 110 138 - -
HCH12g0047 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 50 66 - -
HCH12g0047 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
HCH12g0047 921 FunFam Glutamate receptor 584 714 - -
HCH12g0047 921 Pfam Receptor family ligand binding region 54 411 IPR001828 -
HCH12g0047 921 FunFam Glutamate receptor 710 817 - -
HCH12g0047 921 Gene3D - 749 820 - -
HCH12g0047 921 CDD GluR_Plant 471 813 - -
HCH12g0047 921 PIRSF IGluLR_plant 3 920 IPR017103 -
HCH12g0047 921 Gene3D - 470 581 - -
HCH12g0047 921 Pfam Bacterial extracellular solute-binding proteins, family 3 494 593 IPR001638 -
HCH12g0047 921 MobiDBLite consensus disorder prediction 884 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0047 HCH-Chr12:243662 HCH14g0718 HCH-Chr14:35570764 0.00E+00 dispersed
HCH5g0140 HCH-Chr5:836613 HCH12g0047 HCH-Chr12:243662 4.90E-89 transposed
HCH6g0120 HCH-Chr6:1510322 HCH12g0047 HCH-Chr12:243662 1.20E-130 transposed
HCH7g0261 HCH-Chr7:1816237 HCH12g0047 HCH-Chr12:243662 4.70E-88 transposed
HCH12g0047 HCH-Chr12:243662 HCH7g0393 HCH-Chr7:2827069 1.30E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0047 K05387 - csv:101204862 1465.29