Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0047 | ATGAAGATGAGTTTGATTGGGCTTCTTTCACTGTTGTCTCTCTATTCTGGTGTTTTCCCAATTGTGTTTAGCAAGAACATTTCTTCTACTTCTTCAAGACCATCTGTTGTGAATATTGGAGCTATTTTTGCATTTGAATCTACTATTGGAAAAGTTGCTAAGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCTGATCCCACTATCCTTCCTGGAACAACCCTTCGGTTACAAATGCAAAATTCTAACTGCAGTGGGTTTCTGGGGATGGTTGAAGTATTGCAACTTATGGAGAATGATACGGTTGCCATCGTAGGCCCTCAATCTTCTGTGGTTGCACATATTGCATCCCAGGTTGCTAGTGAACTCCAAGTCCCCTTAGTGTCATTTGCAGCGACAGATCCCACTCTATCCGCCCTTCAGTTCCCCTTCTTTGTGAGGGCTGCTCAGAGTGATTTGTTTCAAATGGCTGCAGTTACTGAGATTATTGACTATTATGGTTGGAAGGAGGTTATTGCTATTTACATTGATGATGACTATGGGTGGAATGGTATTGCAGCATTAGATGATAAACTTGCAGAGAGGCGCTGTAAGATCTCATATAAGGTAGGTATTAATCCAAAATCCGTGTTCAATCGAGGTGATATTATGGATCGTCTTATTAAGGTTGCACTAATGGAATCTAGAGTTATGGTCCTCCATGTGAATCCAAATTTAGGTTTTTTAGTCTTTTCAGTGGCACAATACCTTGGAATGATGAGTAATGGATATGTATGGATAGCTACTGATTGGCTTTCTTCTGCATTAGATAGTACTTTACCTCTTCCTCCTGAGACCATGGATTCAATGCAAGGAGTTCTTTCTTTACGCCAGCACACACCAGATTCAGATAGAAAGAAAGCCTTTCTTTCCAGGTGGAACAAGTTAACTGGCCGTTCTTTGGGTTTGAATTCTTATGGGCTATATGCTTATGATTCTGTTTGGCTGGTTGCCCATGCCATCAACAATTTTTTTGATCAAGGTGGGATTATTTCACGTTCTAATGATTCCAGGCTAAATTCCAGTGATAGTGGCAATCTTCATCTTGAAGCAATGACTATCTTGGATGGTGGAAATCATCTGCTGAAGAACATATTGGAGAGTGACTTTGTTGGTTTGACTGGTGCCATTAAGTTTGATTATCAAAGATCTCTTCTTCACCCTGCCTATGATATCATTAATGTAATTGGGTCTGGATCTAGAAGGGTTGGTTATTGGTCCAATTATTCTGGTTTATCGGTTGATACTCCTGAGACATTCTATGATAAACCGTCTAATCGTTCAGCGGCAAATCAGAAGCTCTACGATGTTATATGGCCCGGAAACACATTAGCAACGCCTCGAGGATGGGTTTTCCCGAACAACGGGAAGCTACTAAATATTGGAGTACCTATTCGGGTCGGTTTCAAGGAATTTGTATCACAAGTCAAAGGAACTGACAATTTCAAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCTGTCCCACACCGATTTATCCCCTTTGGAGATGGCCATAAGAACCCAAATTACTCAGAACTTGTGCATCTGATTACAACTGGCAAATTTGATGCTGTTGTGGGAGATATTGCCATAGTCACAAGCCGTACAAAGATTGTGGATTTTACTCTGCCATATACTGCTTCTGGATTAGTTGTTGTGGCACCTTTCAGAAAGCTGAATACTGGTGCTTGGGCCTTCCTGCATCCATTCTCTCCAGCCATGTGGATTGTCACTGCTTCTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATCGGACAAACGATGAATTCAGAGGCCCACCCAAAAGACAATTTATTACAATTTTATGGTTTAGCTTCTCAACACTATTCTTCGCCCATAGAGAGAACACAATTAGCACTCTAGGTCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTCTGATAGTTAATTCTAGCTACACTGCCAGTCTAACATCCATTCTAACAGTGCAGAAGCTATATTCTCCCATTACTGGAATCGAAACCTTGAGAAAAATGAATGAACGAATAGGTTTCCAAGTTGGATCTTTTGCTGAACATTATTTGACTGAGGAGCTTAATATATCTGAATCTAGGCTTGTTCCTCTTGGATCACCTGAAGAATATGCAAAGGCACTTGACCTTGGTCCTGAGAAGGGAGGTGTTGCTGCTATAGTTGATGAACTTCCATATGTTGAAATTTTCCTCTCAAGACAGTGCACATTCAGAGTTGTTGGTCAAGAATTCACCAAAAGTGGATGGGGTTTTGCATTTCAGCGCGACTCTCCCTTGGCAGTTGACATGTCAACTGCCATTCTGCAGCTGTCTGAGAATGGTGATCTACAACGGATTCATGACAAATGGTTAGTGAGAAGTGCTTGCAGCTTGGACAATGCAGAACTCGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTCTTTCTAATTTGTGGGATAGTCTGCTTCTTTGCTCTGGTCATATACTGCTTTCAGATTATTCGTCAGTTGCGCAATTCCGCTTCTGAAGGATCTGATACTAAGTGCCTTGGACAAATTATGTCAATATTGGATGCGAAGGAAGATCCTTCTAAAAAGGATAGCAAAAGAAGGAAGGTGGAGAAATCATCTCAAAACGACAAGGATGATAATTTGGAGGAAAATCCTCAAGAGAGGCTTGGCATACAGAAATGA | 2766 | 41.14 | MKMSLIGLLSLLSLYSGVFPIVFSKNISSTSSRPSVVNIGAIFAFESTIGKVAKIAIEEAVKDVNADPTILPGTTLRLQMQNSNCSGFLGMVEVLQLMENDTVAIVGPQSSVVAHIASQVASELQVPLVSFAATDPTLSALQFPFFVRAAQSDLFQMAAVTEIIDYYGWKEVIAIYIDDDYGWNGIAALDDKLAERRCKISYKVGINPKSVFNRGDIMDRLIKVALMESRVMVLHVNPNLGFLVFSVAQYLGMMSNGYVWIATDWLSSALDSTLPLPPETMDSMQGVLSLRQHTPDSDRKKAFLSRWNKLTGRSLGLNSYGLYAYDSVWLVAHAINNFFDQGGIISRSNDSRLNSSDSGNLHLEAMTILDGGNHLLKNILESDFVGLTGAIKFDYQRSLLHPAYDIINVIGSGSRRVGYWSNYSGLSVDTPETFYDKPSNRSAANQKLYDVIWPGNTLATPRGWVFPNNGKLLNIGVPIRVGFKEFVSQVKGTDNFKGFCIDVFTAAVNLLPYAVPHRFIPFGDGHKNPNYSELVHLITTGKFDAVVGDIAIVTSRTKIVDFTLPYTASGLVVVAPFRKLNTGAWAFLHPFSPAMWIVTASFFLFIGIVVWILEHRTNDEFRGPPKRQFITILWFSFSTLFFAHRENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQKLYSPITGIETLRKMNERIGFQVGSFAEHYLTEELNISESRLVPLGSPEEYAKALDLGPEKGGVAAIVDELPYVEIFLSRQCTFRVVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQRIHDKWLVRSACSLDNAELESDRLQLKSFWGLFLICGIVCFFALVIYCFQIIRQLRNSASEGSDTKCLGQIMSILDAKEDPSKKDSKRRKVEKSSQNDKDDNLEENPQERLGIQK | 921 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 243662 | 247382 | - | evm.model.ptg000002l.1612 | HCH12g0047 | 554894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0047 | 921 | Gene3D | - | 55 | 401 | - | - | |
HCH12g0047 | 921 | Pfam | Ligand-gated ion channel | 814 | 845 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH12g0047 | 921 | SMART | GluR_14 | 474 | 815 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
HCH12g0047 | 921 | FunFam | Glutamate receptor | 468 | 584 | - | - | |
HCH12g0047 | 921 | CDD | PBP1_GABAb_receptor_plant | 38 | 428 | IPR044440 | - | |
HCH12g0047 | 921 | Gene3D | - | 582 | 722 | - | - | |
HCH12g0047 | 921 | SUPERFAMILY | Periplasmic binding protein-like II | 451 | 815 | - | - | |
HCH12g0047 | 921 | FunFam | Glutamate receptor | 152 | 311 | - | - | |
HCH12g0047 | 921 | SUPERFAMILY | Periplasmic binding protein-like I | 31 | 465 | IPR028082 | - | |
HCH12g0047 | 921 | Gene3D | - | 152 | 426 | - | - | |
HCH12g0047 | 921 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 37 | 895 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
HCH12g0047 | 921 | MobiDBLite | consensus disorder prediction | 884 | 921 | - | - | |
HCH12g0047 | 921 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 110 | 138 | - | - | |
HCH12g0047 | 921 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 50 | 66 | - | - | |
HCH12g0047 | 921 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 324 | 336 | - | - | |
HCH12g0047 | 921 | FunFam | Glutamate receptor | 584 | 714 | - | - | |
HCH12g0047 | 921 | Pfam | Receptor family ligand binding region | 54 | 411 | IPR001828 | - | |
HCH12g0047 | 921 | FunFam | Glutamate receptor | 710 | 817 | - | - | |
HCH12g0047 | 921 | Gene3D | - | 749 | 820 | - | - | |
HCH12g0047 | 921 | CDD | GluR_Plant | 471 | 813 | - | - | |
HCH12g0047 | 921 | PIRSF | IGluLR_plant | 3 | 920 | IPR017103 | - | |
HCH12g0047 | 921 | Gene3D | - | 470 | 581 | - | - | |
HCH12g0047 | 921 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 494 | 593 | IPR001638 | - | |
HCH12g0047 | 921 | MobiDBLite | consensus disorder prediction | 884 | 914 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0047 | HCH-Chr12:243662 | HCH14g0718 | HCH-Chr14:35570764 | 0.00E+00 | dispersed | |
HCH5g0140 | HCH-Chr5:836613 | HCH12g0047 | HCH-Chr12:243662 | 4.90E-89 | transposed | |
HCH6g0120 | HCH-Chr6:1510322 | HCH12g0047 | HCH-Chr12:243662 | 1.20E-130 | transposed | |
HCH7g0261 | HCH-Chr7:1816237 | HCH12g0047 | HCH-Chr12:243662 | 4.70E-88 | transposed | |
HCH12g0047 | HCH-Chr12:243662 | HCH7g0393 | HCH-Chr7:2827069 | 1.30E-281 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0047 | K05387 | - | csv:101204862 | 1465.29 |