Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0048 ATGGCCACGGGTATAGATTTTTCACCTCCTTTTACCTTACTGGAAGGAAGTTACAATAAGGACAATGTATCGGCCACGAATGATGATAATTCTGGTGCCTTTAATAGTTTGAAACAGATGACCAGTGGGAAACCCCCTCGACACCTCTCCGCTATGCGCCATAGTGTGAGCTCCATAAAGCTGCTTGGCCAAGATGATTTTAGCCTGGATGCTGAAACTTTTGAAAATAAGTCGCCTGATGGAAAGTCAGGATTCTTACCTGTCTTCAGATCAGGCAGCTGTTCAGAAAGAGGACCTAAACAGTACATGGAGGATGAGCACATTTGCATAGATGATCTTGTTGGACATATCCATACGGGTGCAGAGTTCACTTCTCCTGGAGCTTTCTATGGGGTATTTGATGGCCATGGGGGCACAGATGCAGCAGCATTTGTTAGAAATAACATTCTCAGATTTATAGTCGAGGACTCCTGTTTTCCAATCTGTGTAGAGAAGGCAATTAAAAGTGCTTTTTTGAAAGCTGATTATGCATTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTAACTGCTTTCATTTTTGGAAGGACAATAATTATTGCGAATGCTGGAGATTGCCGAGCTGTTATGGGGAGGAGGGGCAAGGCAATTGAGGTGTCAAAGGATCACAAGCCCAACTGTACATCTGAAAGACTTAGAATTGAGAAGCTCGGTGGAGTGATTTATGATGGCTACCTCAATGGCCAGTTATCTGTTGCACGTGCTATAGGAGACTGGCACATGAAAGGAGCCAAGGGTTCTGCATGTCCACTGAGTGCAGAGCCAGAGCTGCAAGAAATGAACTTGACTGAGGAAGACGAATTCTTAATAATGGGCTGTGATGGTCTGTGGGATGTCATGAGCAGTCAGTGTGCTGTCACCATGGCAAGGAAAGAACTGATGCTACATAACGATCCTGAAAGATGTTCAAGAGAGCTTGTAAGGGAGGCACTAAAGCGGAATACATGTGACAATTTAACTGTTATTGTGGTCTGTTTTTCTCCTGATCCGCCCCCTCGGATAGAAGTACCTCCATCTCGGGTGAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAGGGTGTACTTGACTGCAATTCATGA 1158 44.73 MATGIDFSPPFTLLEGSYNKDNVSATNDDNSGAFNSLKQMTSGKPPRHLSAMRHSVSSIKLLGQDDFSLDAETFENKSPDGKSGFLPVFRSGSCSERGPKQYMEDEHICIDDLVGHIHTGAEFTSPGAFYGVFDGHGGTDAAAFVRNNILRFIVEDSCFPICVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTIIIANAGDCRAVMGRRGKAIEVSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQEMNLTEEDEFLIMGCDGLWDVMSSQCAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSPDPPPRIEVPPSRVRRSISLEGLNLLKGVLDCNS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 251006 253805 + evm.model.ptg000002l.1611 HCH12g0048 554895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0048 385 Gene3D - 70 353 IPR036457 -
HCH12g0048 385 ProSiteProfiles PPM-type phosphatase domain profile. 90 350 IPR001932 -
HCH12g0048 385 FunFam Probable protein phosphatase 2C 22 73 353 - -
HCH12g0048 385 SMART PP2C_4 80 348 IPR001932 -
HCH12g0048 385 CDD PP2Cc 89 350 IPR001932 -
HCH12g0048 385 PANTHER PROTEIN PHOSPHATASE 2C 73 350 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH12g0048 385 SUPERFAMILY PP2C-like 83 351 IPR036457 -
HCH12g0048 385 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169(InterPro)
HCH12g0048 385 Pfam Protein phosphatase 2C 91 342 IPR001932 -
HCH12g0048 385 MobiDBLite consensus disorder prediction 22 49 - -
HCH12g0048 385 MobiDBLite consensus disorder prediction 22 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0343 HCH-Chr10:2772309 HCH12g0048 HCH-Chr12:251006 1.90E-90 dispersed
HCH12g0048 HCH-Chr12:251006 HCH4g1111 HCH-Chr4:7273095 8.30E-86 dispersed
HCH12g0048 HCH-Chr12:251006 HCH12g0426 HCH-Chr12:2465023 2.60E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0048 K14803 - csv:101205355 714.531