Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0054 | ATGATGGAGTGGCAGAAGCAGCAGCAGCATCAGCATGAGCTTGAAGAAGATGAATTAAAGAAGGGTGTTGTTGATGGAGTTGGTGGGTTATACGCAAAGGTGATGACTGATGAGCAATTGGAGCTTCTTAGGCAACAGATCTCTCTTTATTCTTCCATTTGTCACCAGCTTGTTAACATGCATAAGTCCATCTCTGCGCAACAAGACCTTGCTGGTATGAGGCTTGGGAATCTCTACTGTGATCCAATATTCGTATCTGGTGCTGCCCACAAGATCACTCCTAGGCAGAGGTGGACACCTTCCCCAATGCAGCTTCAAATTCTTGAGCAAATCTTTGATCAAGGCAATGGGACCCCGACCAAGCACAAGATCAAAGATATTACTTTACAACTTACACAATACGGTCCAATTTCAGAATCAAATGTTTATAATTGGTTTCAAAACAGGAGAGCTCGTTCTAAAAGAAAGCAACCAAATTCTGCAACTAATAATAATAATCCAGACTCTGAAGCTGACACGGAAGTTGATTCTCCAAAGGACAAAAAGACAACACCTGATACCTTCCAAACTTGTCAACCAAAATCAAACAGCTTTTATCCTCAAATACATGATTTAGGTGCTGAAATGCTTTCTTTTGATGCACAATCAAATGAAGAGGAACCCATGTTTCAGTCTTACAGATCTGGTATCAATGATAAGATGAGCGTTCCGGATGGATATACCTCTTACCATCATCCTTTGTGA | 744 | 40.99 | MMEWQKQQQHQHELEEDELKKGVVDGVGGLYAKVMTDEQLELLRQQISLYSSICHQLVNMHKSISAQQDLAGMRLGNLYCDPIFVSGAAHKITPRQRWTPSPMQLQILEQIFDQGNGTPTKHKIKDITLQLTQYGPISESNVYNWFQNRRARSKRKQPNSATNNNNPDSEADTEVDSPKDKKTTPDTFQTCQPKSNSFYPQIHDLGAEMLSFDAQSNEEEPMFQSYRSGINDKMSVPDGYTSYHHPL | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 280241 | 281190 | - | evm.model.ptg000002l.1605 | HCH12g0054 | 554901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0054 | 247 | CDD | homeodomain | 94 | 157 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0054 | 247 | ProSiteProfiles | 'Homeobox' domain profile. | 91 | 156 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0054 | 247 | MobiDBLite | consensus disorder prediction | 157 | 171 | - | - | |
HCH12g0054 | 247 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 229 | IPR044559 | GO:0003700(InterPro) | |
HCH12g0054 | 247 | Gene3D | - | 94 | 164 | - | - | |
HCH12g0054 | 247 | Pfam | Homeodomain | 95 | 155 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0054 | 247 | SUPERFAMILY | Homeodomain-like | 93 | 158 | IPR009057 | - | |
HCH12g0054 | 247 | SMART | HOX_1 | 93 | 160 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0054 | 247 | MobiDBLite | consensus disorder prediction | 150 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0054 | HCH-Chr12:280241 | HCH13g1298 | HCH-Chr13:40967101 | 1.20E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32640 | PF00046 | Homeodomain | 1.40E-16 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0054 | - | - | - | 0.0 |