Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0054 ATGATGGAGTGGCAGAAGCAGCAGCAGCATCAGCATGAGCTTGAAGAAGATGAATTAAAGAAGGGTGTTGTTGATGGAGTTGGTGGGTTATACGCAAAGGTGATGACTGATGAGCAATTGGAGCTTCTTAGGCAACAGATCTCTCTTTATTCTTCCATTTGTCACCAGCTTGTTAACATGCATAAGTCCATCTCTGCGCAACAAGACCTTGCTGGTATGAGGCTTGGGAATCTCTACTGTGATCCAATATTCGTATCTGGTGCTGCCCACAAGATCACTCCTAGGCAGAGGTGGACACCTTCCCCAATGCAGCTTCAAATTCTTGAGCAAATCTTTGATCAAGGCAATGGGACCCCGACCAAGCACAAGATCAAAGATATTACTTTACAACTTACACAATACGGTCCAATTTCAGAATCAAATGTTTATAATTGGTTTCAAAACAGGAGAGCTCGTTCTAAAAGAAAGCAACCAAATTCTGCAACTAATAATAATAATCCAGACTCTGAAGCTGACACGGAAGTTGATTCTCCAAAGGACAAAAAGACAACACCTGATACCTTCCAAACTTGTCAACCAAAATCAAACAGCTTTTATCCTCAAATACATGATTTAGGTGCTGAAATGCTTTCTTTTGATGCACAATCAAATGAAGAGGAACCCATGTTTCAGTCTTACAGATCTGGTATCAATGATAAGATGAGCGTTCCGGATGGATATACCTCTTACCATCATCCTTTGTGA 744 40.99 MMEWQKQQQHQHELEEDELKKGVVDGVGGLYAKVMTDEQLELLRQQISLYSSICHQLVNMHKSISAQQDLAGMRLGNLYCDPIFVSGAAHKITPRQRWTPSPMQLQILEQIFDQGNGTPTKHKIKDITLQLTQYGPISESNVYNWFQNRRARSKRKQPNSATNNNNPDSEADTEVDSPKDKKTTPDTFQTCQPKSNSFYPQIHDLGAEMLSFDAQSNEEEPMFQSYRSGINDKMSVPDGYTSYHHPL 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 280241 281190 - evm.model.ptg000002l.1605 HCH12g0054 554901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0054 247 CDD homeodomain 94 157 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 MobiDBLite consensus disorder prediction 157 171 - -
HCH12g0054 247 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 229 IPR044559 GO:0003700(InterPro)
HCH12g0054 247 Gene3D - 94 164 - -
HCH12g0054 247 Pfam Homeodomain 95 155 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 SUPERFAMILY Homeodomain-like 93 158 IPR009057 -
HCH12g0054 247 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 MobiDBLite consensus disorder prediction 150 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0054 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0054 HCH-Chr12:280241 HCH13g1298 HCH-Chr13:40967101 1.20E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH4g0626 . 5 153 Wox Gene Family AT1G46480 68.4 2.5e-51 198.7
HCH13g0539 . 31 191 Wox Gene Family AT3G11260 51.7 6.2e-39 157.5
HCH11g0661 . 19 256 Wox Gene Family AT3G03660 55.5 8.7e-51 197.6
HCH12g0054 . 28 173 Wox Gene Family AT1G20700 50.7 1.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32640 PF00046 Homeodomain 1.40E-16 CL0123 HCH TF