Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0054 ATGATGGAGTGGCAGAAGCAGCAGCAGCATCAGCATGAGCTTGAAGAAGATGAATTAAAGAAGGGTGTTGTTGATGGAGTTGGTGGGTTATACGCAAAGGTGATGACTGATGAGCAATTGGAGCTTCTTAGGCAACAGATCTCTCTTTATTCTTCCATTTGTCACCAGCTTGTTAACATGCATAAGTCCATCTCTGCGCAACAAGACCTTGCTGGTATGAGGCTTGGGAATCTCTACTGTGATCCAATATTCGTATCTGGTGCTGCCCACAAGATCACTCCTAGGCAGAGGTGGACACCTTCCCCAATGCAGCTTCAAATTCTTGAGCAAATCTTTGATCAAGGCAATGGGACCCCGACCAAGCACAAGATCAAAGATATTACTTTACAACTTACACAATACGGTCCAATTTCAGAATCAAATGTTTATAATTGGTTTCAAAACAGGAGAGCTCGTTCTAAAAGAAAGCAACCAAATTCTGCAACTAATAATAATAATCCAGACTCTGAAGCTGACACGGAAGTTGATTCTCCAAAGGACAAAAAGACAACACCTGATACCTTCCAAACTTGTCAACCAAAATCAAACAGCTTTTATCCTCAAATACATGATTTAGGTGCTGAAATGCTTTCTTTTGATGCACAATCAAATGAAGAGGAACCCATGTTTCAGTCTTACAGATCTGGTATCAATGATAAGATGAGCGTTCCGGATGGATATACCTCTTACCATCATCCTTTGTGA 744 40.99 MMEWQKQQQHQHELEEDELKKGVVDGVGGLYAKVMTDEQLELLRQQISLYSSICHQLVNMHKSISAQQDLAGMRLGNLYCDPIFVSGAAHKITPRQRWTPSPMQLQILEQIFDQGNGTPTKHKIKDITLQLTQYGPISESNVYNWFQNRRARSKRKQPNSATNNNNPDSEADTEVDSPKDKKTTPDTFQTCQPKSNSFYPQIHDLGAEMLSFDAQSNEEEPMFQSYRSGINDKMSVPDGYTSYHHPL 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 280241 281190 - evm.model.ptg000002l.1605 HCH12g0054 554901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0054 247 CDD homeodomain 94 157 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 MobiDBLite consensus disorder prediction 157 171 - -
HCH12g0054 247 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 229 IPR044559 GO:0003700(InterPro)
HCH12g0054 247 Gene3D - 94 164 - -
HCH12g0054 247 Pfam Homeodomain 95 155 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 SUPERFAMILY Homeodomain-like 93 158 IPR009057 -
HCH12g0054 247 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
HCH12g0054 247 MobiDBLite consensus disorder prediction 150 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0054 HCH-Chr12:280241 HCH13g1298 HCH-Chr13:40967101 1.20E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32640 PF00046 Homeodomain 1.40E-16 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0054 - - - 0.0