Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0057 | ATGAGCTGCTTTCCTTGTATTCGTACTCGCTGTAAAGATGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGAAAGTCGTATGTGAATGAAACTGGAAAGGGAAAGGAATCACAAAGCGGAGTCGGAAACAACCCCAAAGGCGGGGCTGCACGTAGTTTCCAATTTCGTGAACTCGCAGCAGCAACAAGAGGGTTCAAGGAAGTCAATTTGATTGGGGAAGGGGGTTTTGGAAGGGTTTACAAAGGTCGATTAGAAACAGGCCAGGTTGTTGCAATTAAACAACTCAATCAGGACGGTCTTCAAGGATTCCAGGAATTTATTGTGGAAGTTCTCATGTTAAGCTTGTTACATCATTGCAATCTTGTCACTTTGATTGGTTACTGTACTGATGGAGATCAAAGACTATTGGTCTACGAGTACATGTCCATGGGAAGCTTGGAAAACCATCTTTTTGATTTGCCCCCTGAAAGACAGCCATTGAGCTGGAATACTCGAATTAAGATTGCTCTTGGTGCAGCCCGGGGCCTCGAGTATGTTCACTGCACAGCAAACCCACCAGTCATCTATCGAGACTTGAAATCCGCAAATATTTTACTGGACAATGACTTTAATCCAAAGCTCTCAGATTTTGGACTGGCCAAACTGGGACCAGTTGGTGACAATACCCATGTTTCCACTAGAGTGATGGGGACTTATGGTTATTGTGCTCCAGAGTATGCCATGAGCGGCAAACTGACTCTTAAATCTGATATCTATTGCTTTGGTGTGGTTCTCTTGGAGATACTTACAGGTAGGAAAGCAATAGACTGCACCAAGAAACCGGGAGAGCAAAATTTGGTTTCTTGGTCTCGCCCGTTTCTCAAAGACCGAAGGAAGTTTGTTCAATTAGTTGACCCACTGCTGCAAGGACAGTACCCTCTCCGTTGTTTACATCATGCAATTGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACGTTCCGGCCAATCATCAGTGATATTGTCGTAGCACTTGAGTACTTGGCTTCCCAGAGTTGCACATCAGAACAACCGAGGGAGGGGGCACCCAGTCCCTCCCGACCATCTCCTCAACAGGAAAGGAGTATCAATCTCCAGGAATCAAGATATAAAAGGAGTTCATCATCTAGTTAA | 1158 | 45.42 | MSCFPCIRTRCKDASKVEIDNGSGRGKSYVNETGKGKESQSGVGNNPKGGAARSFQFRELAAATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNQDGLQGFQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFDLPPERQPLSWNTRIKIALGAARGLEYVHCTANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEILTGRKAIDCTKKPGEQNLVSWSRPFLKDRRKFVQLVDPLLQGQYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSCTSEQPREGAPSPSRPSPQQERSINLQESRYKRSSSSS | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 291640 | 293905 | + | evm.model.ptg000002l.1602 | HCH12g0057 | 554904 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0057 | 385 | ProSiteProfiles | Protein kinase domain profile. | 67 | 343 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0057 | 385 | MobiDBLite | consensus disorder prediction | 349 | 385 | - | - | |
HCH12g0057 | 385 | Pfam | Protein kinase domain | 68 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0057 | 385 | ProSitePatterns | Protein kinases ATP-binding region signature. | 73 | 95 | IPR017441 | GO:0005524(InterPro) | |
HCH12g0057 | 385 | MobiDBLite | consensus disorder prediction | 25 | 49 | - | - | |
HCH12g0057 | 385 | FunFam | Serine/threonine-protein kinase PBS1 | 143 | 357 | - | - | |
HCH12g0057 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 49 | 341 | IPR011009 | - | |
HCH12g0057 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 143 | 357 | - | - | |
HCH12g0057 | 385 | PANTHER | OS07G0668900 PROTEIN | 39 | 362 | - | - | |
HCH12g0057 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 39 | 142 | - | - | |
HCH12g0057 | 385 | CDD | STKc_IRAK | 73 | 341 | - | - | |
HCH12g0057 | 385 | MobiDBLite | consensus disorder prediction | 33 | 47 | - | - | |
HCH12g0057 | 385 | FunFam | probable serine/threonine-protein kinase RLCKVII | 39 | 142 | - | - | |
HCH12g0057 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0057 | 385 | SMART | serkin_6 | 67 | 343 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0057 | HCH-Chr12:291640 | HCH4g0852 | HCH-Chr4:5449072 | 1.90E-162 | dispersed | |
HCH7g0172 | HCH-Chr7:1136776 | HCH12g0057 | HCH-Chr12:291640 | 2.00E-65 | dispersed | |
HCH12g0057 | HCH-Chr12:291640 | HCH13g1305 | HCH-Chr13:41020950 | 4.10E-77 | wgd | |
HCH12g0057 | HCH-Chr12:291640 | HCH4g0851 | HCH-Chr4:5442881 | 2.00E-76 | wgd | |
HCH12g0057 | HCH-Chr12:291640 | HCH7g0401 | HCH-Chr7:2908922 | 8.00E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81093 | PF00069 | Pkinase | 6.70E-45 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0057 | - | - | - | 0.0 |