Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0057 ATGAGCTGCTTTCCTTGTATTCGTACTCGCTGTAAAGATGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGAAAGTCGTATGTGAATGAAACTGGAAAGGGAAAGGAATCACAAAGCGGAGTCGGAAACAACCCCAAAGGCGGGGCTGCACGTAGTTTCCAATTTCGTGAACTCGCAGCAGCAACAAGAGGGTTCAAGGAAGTCAATTTGATTGGGGAAGGGGGTTTTGGAAGGGTTTACAAAGGTCGATTAGAAACAGGCCAGGTTGTTGCAATTAAACAACTCAATCAGGACGGTCTTCAAGGATTCCAGGAATTTATTGTGGAAGTTCTCATGTTAAGCTTGTTACATCATTGCAATCTTGTCACTTTGATTGGTTACTGTACTGATGGAGATCAAAGACTATTGGTCTACGAGTACATGTCCATGGGAAGCTTGGAAAACCATCTTTTTGATTTGCCCCCTGAAAGACAGCCATTGAGCTGGAATACTCGAATTAAGATTGCTCTTGGTGCAGCCCGGGGCCTCGAGTATGTTCACTGCACAGCAAACCCACCAGTCATCTATCGAGACTTGAAATCCGCAAATATTTTACTGGACAATGACTTTAATCCAAAGCTCTCAGATTTTGGACTGGCCAAACTGGGACCAGTTGGTGACAATACCCATGTTTCCACTAGAGTGATGGGGACTTATGGTTATTGTGCTCCAGAGTATGCCATGAGCGGCAAACTGACTCTTAAATCTGATATCTATTGCTTTGGTGTGGTTCTCTTGGAGATACTTACAGGTAGGAAAGCAATAGACTGCACCAAGAAACCGGGAGAGCAAAATTTGGTTTCTTGGTCTCGCCCGTTTCTCAAAGACCGAAGGAAGTTTGTTCAATTAGTTGACCCACTGCTGCAAGGACAGTACCCTCTCCGTTGTTTACATCATGCAATTGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACGTTCCGGCCAATCATCAGTGATATTGTCGTAGCACTTGAGTACTTGGCTTCCCAGAGTTGCACATCAGAACAACCGAGGGAGGGGGCACCCAGTCCCTCCCGACCATCTCCTCAACAGGAAAGGAGTATCAATCTCCAGGAATCAAGATATAAAAGGAGTTCATCATCTAGTTAA 1158 45.42 MSCFPCIRTRCKDASKVEIDNGSGRGKSYVNETGKGKESQSGVGNNPKGGAARSFQFRELAAATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNQDGLQGFQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFDLPPERQPLSWNTRIKIALGAARGLEYVHCTANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEILTGRKAIDCTKKPGEQNLVSWSRPFLKDRRKFVQLVDPLLQGQYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSCTSEQPREGAPSPSRPSPQQERSINLQESRYKRSSSSS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 291640 293905 + evm.model.ptg000002l.1602 HCH12g0057 554904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0057 385 ProSiteProfiles Protein kinase domain profile. 67 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0057 385 MobiDBLite consensus disorder prediction 349 385 - -
HCH12g0057 385 Pfam Protein kinase domain 68 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0057 385 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524(InterPro)
HCH12g0057 385 MobiDBLite consensus disorder prediction 25 49 - -
HCH12g0057 385 FunFam Serine/threonine-protein kinase PBS1 143 357 - -
HCH12g0057 385 SUPERFAMILY Protein kinase-like (PK-like) 49 341 IPR011009 -
HCH12g0057 385 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
HCH12g0057 385 PANTHER OS07G0668900 PROTEIN 39 362 - -
HCH12g0057 385 Gene3D Phosphorylase Kinase; domain 1 39 142 - -
HCH12g0057 385 CDD STKc_IRAK 73 341 - -
HCH12g0057 385 MobiDBLite consensus disorder prediction 33 47 - -
HCH12g0057 385 FunFam probable serine/threonine-protein kinase RLCKVII 39 142 - -
HCH12g0057 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0057 385 SMART serkin_6 67 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0057 HCH-Chr12:291640 HCH4g0852 HCH-Chr4:5449072 1.90E-162 dispersed
HCH7g0172 HCH-Chr7:1136776 HCH12g0057 HCH-Chr12:291640 2.00E-65 dispersed
HCH12g0057 HCH-Chr12:291640 HCH13g1305 HCH-Chr13:41020950 4.10E-77 wgd
HCH12g0057 HCH-Chr12:291640 HCH4g0851 HCH-Chr4:5442881 2.00E-76 wgd
HCH12g0057 HCH-Chr12:291640 HCH7g0401 HCH-Chr7:2908922 8.00E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81093 PF00069 Pkinase 6.70E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0057 - - - 0.0