Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0061 ATGGCTGGATCGGATGAGAATAACCCGGGTGTGATCGGATACGCTAATCTCCATGGGGGTTTACGAGGTGGTGTTGGAAAATCTGTGGTTGGTGTGGGTCAAAACCGTAGAGCTTTGAGCAGTATTAATAGCAATATAACAGCAGCTGCCCCTCATCCCTGTGCCGTCCACAAAAGAGGCCTAACTGGAACTGATGCTTTCAACAACAAAGACCCACATATTCCGGTGCATCGGCCGATCACTAGGAAGTTTGCTGCTCAAATGGCCAATAATAAGCAGCAACTGGTACCTGAGGAAAAGAAGAAGCCAATGCAATGTGTTCCCACTCGAATAGAGTCCAAAGGTCATCATCCTGCCAAGGAAGAAGAGGATGTGATGGGTGAATCAGCAGTGCCAATGTTTGTGCAGCATACAGAAGCAATGCTGGATGAAATTGATAGGATGGAGGAGGTAGAAATGGAAGATATTGAAGAAGAGCCAGTCATTGATATAGACAGTCAAGATAAGAAGGATCCACTGGCTATGGTAGAGTACATTGATGATTTGTATGCCTACTACAGGAAAACAGAGATTTCTAGCTGTGTCCCACCAAACTATATTGCTAAGCAACCGGATATCAATGAGAGGATGAGAGGTATTCTCATTGATTGGCTGATTGAGGTGCACTACAAGTTTGAGCTGATGGATGAGACATTATACCTTACTGTCAACCTAATTGATAGATTCTTAGCTATGCAATCGGTAGTGAGGAAGAAACTTCAGCTTGTTGGGGTGACGGCCATGCTTATCGCCTGCAAGTATGAAGAAGTTTCTGTTCCTGTTGTAGATGATCTTATTCTGATATCCGACAAGGCTTACAGTCGAAAAGAAGTGCTTGATATGGAAAAGTTAATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCATATGTGTTTATGAGAAGGTTTCTCAAAGCTTCTCAATCTGACAAGAAGCTCGACCTGCTGTCGTTCTTCATGGTAGAGCTCTGCCTAGTTGAATATGAAATGCTCAAGTTCCGTCCTTCCTTATTGGCTGCTGCTGCAGTCTTCACCGCTCAATGTACCGTTAACGGGTTCAAGGAATGGAATAAAACCAGTGAATGGCATACTGGCTATTCACAAGAACAACTTTTGGAATGTTCACGTCTGATGGTATCTTACCATGAGCAAGCAGGAACAGGGAAGCTAACAGGAGTTCATAGGAAGTATTGCATGTCAAAGTTTGGATATGCAGCCAGAAGTGAGCCTGCAAGTTTTCTGCTGGAAGAAAGTCTATAG 1305 43.52 MAGSDENNPGVIGYANLHGGLRGGVGKSVVGVGQNRRALSSINSNITAAAPHPCAVHKRGLTGTDAFNNKDPHIPVHRPITRKFAAQMANNKQQLVPEEKKKPMQCVPTRIESKGHHPAKEEEDVMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSQDKKDPLAMVEYIDDLYAYYRKTEISSCVPPNYIAKQPDINERMRGILIDWLIEVHYKFELMDETLYLTVNLIDRFLAMQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKASQSDKKLDLLSFFMVELCLVEYEMLKFRPSLLAAAAVFTAQCTVNGFKEWNKTSEWHTGYSQEQLLECSRLMVSYHEQAGTGKLTGVHRKYCMSKFGYAARSEPASFLLEESL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 330221 332858 + evm.model.ptg000002l.1598 HCH12g0061 554908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0061 434 Gene3D - 181 420 - -
HCH12g0061 434 ProSitePatterns Cyclins signature. 211 242 IPR048258 -
HCH12g0061 434 PANTHER CYCLINS 157 413 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH12g0061 434 SMART cyclin_7 216 300 IPR013763 -
HCH12g0061 434 SMART cyclin_7 313 395 IPR013763 -
HCH12g0061 434 FunFam G2/mitotic-specific cyclin-1 293 421 - -
HCH12g0061 434 Pfam Cyclin, C-terminal domain 309 425 IPR004367 -
HCH12g0061 434 SUPERFAMILY Cyclin-like 308 426 IPR036915 -
HCH12g0061 434 Gene3D - 195 307 - -
HCH12g0061 434 SMART Cyclin_C_2 309 426 IPR004367 -
HCH12g0061 434 SUPERFAMILY Cyclin-like 170 306 IPR036915 -
HCH12g0061 434 CDD CYCLIN_AtCycB-like_rpt2 309 425 - -
HCH12g0061 434 PIRSF Cyclin_A_B_D_E 24 434 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH12g0061 434 Pfam Cyclin, N-terminal domain 181 307 IPR006671 -
HCH12g0061 434 CDD CYCLIN_AtCycB-like_rpt1 160 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0061 HCH-Chr12:330221 HCH14g0711 HCH-Chr14:35539224 8.00E-138 dispersed
HCH7g0021 HCH-Chr7:173000 HCH12g0061 HCH-Chr12:330221 1.20E-57 transposed
HCH9g1125 HCH-Chr9:14309354 HCH12g0061 HCH-Chr12:330221 1.50E-06 transposed
HCH12g0061 HCH-Chr12:330221 HCH13g1311 HCH-Chr13:41075728 2.20E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0061 K21777 - csv:101223199 686.411