Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0078 ATGGCGCTCCCAGGCAACGACATCGATCCAAGAAGCGGCTTCTCCAATTCCACTAAAATATTCCACAGCCAACGGAAACCATTCCCTCTCCCACCCAACCAATATCTGGACGCCACGACATTCATATCTTCCCGTCCTCACAATGGCAATATCGCTCTCATCGACGCTTCCACCGCTCAATACTTCACCTATTCTCAACTCTGGGAATCAGTTGATTCCGTTGCTTCTTCTCTTTCCGACATGGGTATCAGAAAAGGCCACGTCATCCTCCTCCTCTCTCCAAACTCCATCTTCTTCCCTGTCGTTTGCCTCGCTGTCATGTCCATCGGCGCCATCATCACCACTACAAACCCTTTAAACACAACTCAAGAAATCTCCAAACAAATCTCAGATTCCAAACCTGTTTTAGCTTTCACAACTCCACAATTACTCCCCAAAATATCCAATTCTAATTTACCTATAATACTCATCAACGACCAAACCCATCAAACAAACAACGTTAAAATCGTGTCGACGTTAGACGACATGATGATGGTTAAAAAACCGACAGGAAACAGAATCAAAGAACGGATAGAACAAAAAGACACGGCGACACTGCTGTATTCTTCGGGCACGACCGGTGCAAGCAAAGGCGTGGTTTCGTCTCATAAGAATCTCATAGCGATGGTACAAACCGTCGTGACGCGTTTCAATTTAGACGAAGCAGAGCACGAACAAGTTTTCATCTGTACGGTTCCTATGTTTCATATATACGGTCTGGTCGCGTTCGCCACCGGGCTACTCTCGTCTGGCTCGACCATAGTCGTGTTATCGAAATTCGAGATTCATGAGATGTTGTCGGCGATCGATAAGTATCAAGCCACGTACCTTCCTCTCGTGCCTCCCATACTTGTCGCGCTCATTAATAACGCGGATCAGATTAAGGCTAATTATAATTTGAGTTCTTTGCATACGGTTTTATCCGGCGGAGCTCCGCTTAGTAAGGAAGTGATAGAGGGTTTTGTGGAGAAGTATAAGAACGTTACGATTCGTCAGGGTTATGGTTTGACGGAATCGACGGGAATTGGGGCGTCGACGGATTCATTGGAGGAGAGCCGGAGGTACGGCACGGCGGGGAAGTTGTCGCCGTGTATGGAGGCGAAGATTGTTGAACCGGAGACGGGTGAGGCTTTAACGGTGAACCGGACCGGGGAGCTTTGGTTGAGAGGGCCCACGATAATGAAAGGTTATTTTGGTAATGTAGAGGCCACGACCTCTACGCTTGATTCAGAGGGATGGTTGAGAACTGGCGATCTCTGTTACATTGATGAAGATGGTTTCATTTTTGTGGTTGATAGGCTCAAGGAACTAATCAAATATAAGGGTTATCAGGTTCCTCCTGCAGAGCTAGAGGCATTGTTACTAACTCATCCTGATATTTCTGATGCAGCTGTTATACCGTTTCCGGATAGAGAGGTTGGACAATATCCCATGGCTTATGTGGTTAGAAAAGGTGGAAGTGATATTTCCCACGAAGATGTTATGCAATTCGTTGCAAAACAGGTGGCTCCGTACAAGAGAGTACGGAGAGTGGCATTTGTGGATTCTATTCCAAAGAATCCTTCTGGTAAGATTCTGAGGAAGGATCTTATAAAGCTTGCAACCTCCAAACTCTGA 1656 46.26 MALPGNDIDPRSGFSNSTKIFHSQRKPFPLPPNQYLDATTFISSRPHNGNIALIDASTAQYFTYSQLWESVDSVASSLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSIGAIITTTNPLNTTQEISKQISDSKPVLAFTTPQLLPKISNSNLPIILINDQTHQTNNVKIVSTLDDMMMVKKPTGNRIKERIEQKDTATLLYSSGTTGASKGVVSSHKNLIAMVQTVVTRFNLDEAEHEQVFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIDKYQATYLPLVPPILVALINNADQIKANYNLSSLHTVLSGGAPLSKEVIEGFVEKYKNVTIRQGYGLTESTGIGASTDSLEESRRYGTAGKLSPCMEAKIVEPETGEALTVNRTGELWLRGPTIMKGYFGNVEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPDISDAAVIPFPDREVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRVRRVAFVDSIPKNPSGKILRKDLIKLATSKL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 402955 405778 + evm.model.ptg000002l.1581 HCH12g0078 554925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0078 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 543 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
HCH12g0078 551 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
HCH12g0078 551 CDD 4CL 30 543 - -
HCH12g0078 551 FunFam 4-coumarate--CoA ligase 2 449 550 - -
HCH12g0078 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 448 - -
HCH12g0078 551 Pfam AMP-binding enzyme 47 411 IPR000873 -
HCH12g0078 551 Gene3D - 449 550 IPR045851 -
HCH12g0078 551 SUPERFAMILY Acetyl-CoA synthetase-like 42 548 - -
HCH12g0078 551 Gene3D - 18 448 IPR042099 -
HCH12g0078 551 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0078 HCH-Chr12:402955 HCH6g0312 HCH-Chr6:4851461 7.60E-101 dispersed
HCH11g0297 HCH-Chr11:2718502 HCH12g0078 HCH-Chr12:402955 1.00E-118 transposed
HCH1g0708 HCH-Chr1:55918110 HCH12g0078 HCH-Chr12:402955 6.70E-129 transposed
HCH3g0428 HCH-Chr3:2743457 HCH12g0078 HCH-Chr12:402955 4.90E-132 transposed
HCH3g1211 HCH-Chr3:44340792 HCH12g0078 HCH-Chr12:402955 9.40E-120 transposed
HCH5g0231 HCH-Chr5:1325541 HCH12g0078 HCH-Chr12:402955 2.40E-129 transposed
HCH5g0501 HCH-Chr5:3406330 HCH12g0078 HCH-Chr12:402955 1.10E-53 transposed
HCH12g0078 HCH-Chr12:402955 HCH13g1315 HCH-Chr13:41122805 2.10E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0078 K10526 - csv:101221396 878.241