Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0090 ATGTCACCGTTGGCGAGAAGCAAGAGCTGGAACGGAATGCAGGATAAGGAGAAGGAGAAGAATTATCCTTCTGCATTAGCTACCCATGACGAGGTTATTATGGACCCCATTGTTTTTTGGGACACTTTGAGGCGCTTCCATTTTATGATGAACACTAAGTTCATGATTCCTGTGATTGGAGGAAAGGAGCTAGATTTGCATGTATTATATTCAGAAGTCACAATAAGGGGTGGCCATGAAAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTAGGAAATGTATTCAAGTTTTCACCGACGACAACAAGTGCTTCATTTGTATTGAGAAAACATTATATGAGTCTTCTCTATCATTACGAGCAAGTTTACTTGTTTGGGAGACAGGGTCCCATTTCTACCCCTCAAGCAGCATTTTCTTTTGGTAGTCCTACGAGTGAAAACGAATTGGCTTTGGTGGAATATAGTCCCAAACCAAAGTCATTTTCGCCGGGTCCGCCTACTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGTCTGTGAAGTTGGGGTCTGAAGTTCTCAGAGGCGTACTTTATCATCCAGAGGAGCCATCCCCATCAGTCTCTTGTCCCCAATCTAACAATGCCATCATACCATACACTGGCAGACATCGACACTCTGGACGTCGGCATCGGAGAAGTAGAAGAAAGGGAGACCCCAACCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAGAAGCATTACAAACTCAAATCTCTCTACCCAAACAGAGAGAGGGAGTTTACTAAGATGATTGGAGAGTCTTGGAACAATCTCAACCCAGAAGAACGGATGGTTTACCAGAACATTGGGTTGAAAGACAAAGAAAGATACAAGAGAGAGTTAAAAGAGTATAAGGAGAAAATAAGGATGACAACGAGTACTGATGTGGCTAACCATTCACAGCTTGGAGTAGATGCGAGCGAGAATTCACCTGCTCCACTGAAGTTATATGAGATATAG 1029 43.05 MSPLARSKSWNGMQDKEKEKNYPSALATHDEVIMDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTIRGGHEKVVAEKKWREVGNVFKFSPTTTSASFVLRKHYMSLLYHYEQVYLFGRQGPISTPQAAFSFGSPTSENELALVEYSPKPKSFSPGPPTEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPSPSVSCPQSNNAIIPYTGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLNPEERMVYQNIGLKDKERYKRELKEYKEKIRMTTSTDVANHSQLGVDASENSPAPLKLYEI 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 482414 484395 + evm.model.ptg000002l.1569 HCH12g0090 554937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0090 342 SMART hmgende2 240 309 IPR009071 -
HCH12g0090 342 Pfam ARID/BRIGHT DNA binding domain 39 120 IPR001606 GO:0003677(InterPro)
HCH12g0090 342 Coils Coil 297 317 - -
HCH12g0090 342 MobiDBLite consensus disorder prediction 221 238 - -
HCH12g0090 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 321 - -
HCH12g0090 342 MobiDBLite consensus disorder prediction 204 218 - -
HCH12g0090 342 SUPERFAMILY HMG-box 238 312 IPR036910 -
HCH12g0090 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
HCH12g0090 342 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677(InterPro)
HCH12g0090 342 CDD HMG-box_AtHMGB9-like 241 307 - -
HCH12g0090 342 MobiDBLite consensus disorder prediction 200 247 - -
HCH12g0090 342 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677(InterPro)
HCH12g0090 342 Gene3D - 11 133 IPR036431 GO:0003677(InterPro)
HCH12g0090 342 Pfam HMG (high mobility group) box 241 308 IPR009071 -
HCH12g0090 342 Gene3D High mobility group box domain 225 326 IPR036910 -
HCH12g0090 342 SMART bright_3 34 125 IPR001606 GO:0003677(InterPro)
HCH12g0090 342 SMART ARID_2 30 120 - -
HCH12g0090 342 SUPERFAMILY ARID-like 29 133 IPR036431 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0090 HCH-Chr12:482414 HCH6g1418 HCH-Chr6:47984744 3.00E-71 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32643 PF01388 ARID 1.20E-17 CL0123 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0090 - - - 0.0