Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0090 | ATGTCACCGTTGGCGAGAAGCAAGAGCTGGAACGGAATGCAGGATAAGGAGAAGGAGAAGAATTATCCTTCTGCATTAGCTACCCATGACGAGGTTATTATGGACCCCATTGTTTTTTGGGACACTTTGAGGCGCTTCCATTTTATGATGAACACTAAGTTCATGATTCCTGTGATTGGAGGAAAGGAGCTAGATTTGCATGTATTATATTCAGAAGTCACAATAAGGGGTGGCCATGAAAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTAGGAAATGTATTCAAGTTTTCACCGACGACAACAAGTGCTTCATTTGTATTGAGAAAACATTATATGAGTCTTCTCTATCATTACGAGCAAGTTTACTTGTTTGGGAGACAGGGTCCCATTTCTACCCCTCAAGCAGCATTTTCTTTTGGTAGTCCTACGAGTGAAAACGAATTGGCTTTGGTGGAATATAGTCCCAAACCAAAGTCATTTTCGCCGGGTCCGCCTACTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGTCTGTGAAGTTGGGGTCTGAAGTTCTCAGAGGCGTACTTTATCATCCAGAGGAGCCATCCCCATCAGTCTCTTGTCCCCAATCTAACAATGCCATCATACCATACACTGGCAGACATCGACACTCTGGACGTCGGCATCGGAGAAGTAGAAGAAAGGGAGACCCCAACCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAGAAGCATTACAAACTCAAATCTCTCTACCCAAACAGAGAGAGGGAGTTTACTAAGATGATTGGAGAGTCTTGGAACAATCTCAACCCAGAAGAACGGATGGTTTACCAGAACATTGGGTTGAAAGACAAAGAAAGATACAAGAGAGAGTTAAAAGAGTATAAGGAGAAAATAAGGATGACAACGAGTACTGATGTGGCTAACCATTCACAGCTTGGAGTAGATGCGAGCGAGAATTCACCTGCTCCACTGAAGTTATATGAGATATAG | 1029 | 43.05 | MSPLARSKSWNGMQDKEKEKNYPSALATHDEVIMDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTIRGGHEKVVAEKKWREVGNVFKFSPTTTSASFVLRKHYMSLLYHYEQVYLFGRQGPISTPQAAFSFGSPTSENELALVEYSPKPKSFSPGPPTEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPSPSVSCPQSNNAIIPYTGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLNPEERMVYQNIGLKDKERYKRELKEYKEKIRMTTSTDVANHSQLGVDASENSPAPLKLYEI | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 482414 | 484395 | + | evm.model.ptg000002l.1569 | HCH12g0090 | 554937 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0090 | 342 | SMART | hmgende2 | 240 | 309 | IPR009071 | - | |
HCH12g0090 | 342 | Pfam | ARID/BRIGHT DNA binding domain | 39 | 120 | IPR001606 | GO:0003677(InterPro) | |
HCH12g0090 | 342 | Coils | Coil | 297 | 317 | - | - | |
HCH12g0090 | 342 | MobiDBLite | consensus disorder prediction | 221 | 238 | - | - | |
HCH12g0090 | 342 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 12 | 321 | - | - | |
HCH12g0090 | 342 | MobiDBLite | consensus disorder prediction | 204 | 218 | - | - | |
HCH12g0090 | 342 | SUPERFAMILY | HMG-box | 238 | 312 | IPR036910 | - | |
HCH12g0090 | 342 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 241 | 308 | IPR009071 | - | |
HCH12g0090 | 342 | ProSiteProfiles | ARID domain profile. | 33 | 124 | IPR001606 | GO:0003677(InterPro) | |
HCH12g0090 | 342 | CDD | HMG-box_AtHMGB9-like | 241 | 307 | - | - | |
HCH12g0090 | 342 | MobiDBLite | consensus disorder prediction | 200 | 247 | - | - | |
HCH12g0090 | 342 | CDD | ARID_HMGB9-like | 35 | 120 | IPR045303 | GO:0003677(InterPro) | |
HCH12g0090 | 342 | Gene3D | - | 11 | 133 | IPR036431 | GO:0003677(InterPro) | |
HCH12g0090 | 342 | Pfam | HMG (high mobility group) box | 241 | 308 | IPR009071 | - | |
HCH12g0090 | 342 | Gene3D | High mobility group box domain | 225 | 326 | IPR036910 | - | |
HCH12g0090 | 342 | SMART | bright_3 | 34 | 125 | IPR001606 | GO:0003677(InterPro) | |
HCH12g0090 | 342 | SMART | ARID_2 | 30 | 120 | - | - | |
HCH12g0090 | 342 | SUPERFAMILY | ARID-like | 29 | 133 | IPR036431 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0090 | HCH-Chr12:482414 | HCH6g1418 | HCH-Chr6:47984744 | 3.00E-71 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32643 | PF01388 | ARID | 1.20E-17 | CL0123 | HCH | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0090 | - | - | - | 0.0 |