Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0090 ATGTCACCGTTGGCGAGAAGCAAGAGCTGGAACGGAATGCAGGATAAGGAGAAGGAGAAGAATTATCCTTCTGCATTAGCTACCCATGACGAGGTTATTATGGACCCCATTGTTTTTTGGGACACTTTGAGGCGCTTCCATTTTATGATGAACACTAAGTTCATGATTCCTGTGATTGGAGGAAAGGAGCTAGATTTGCATGTATTATATTCAGAAGTCACAATAAGGGGTGGCCATGAAAAGGTTGTGGCAGAGAAGAAATGGAGGGAAGTAGGAAATGTATTCAAGTTTTCACCGACGACAACAAGTGCTTCATTTGTATTGAGAAAACATTATATGAGTCTTCTCTATCATTACGAGCAAGTTTACTTGTTTGGGAGACAGGGTCCCATTTCTACCCCTCAAGCAGCATTTTCTTTTGGTAGTCCTACGAGTGAAAACGAATTGGCTTTGGTGGAATATAGTCCCAAACCAAAGTCATTTTCGCCGGGTCCGCCTACTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGTCTGTGAAGTTGGGGTCTGAAGTTCTCAGAGGCGTACTTTATCATCCAGAGGAGCCATCCCCATCAGTCTCTTGTCCCCAATCTAACAATGCCATCATACCATACACTGGCAGACATCGACACTCTGGACGTCGGCATCGGAGAAGTAGAAGAAAGGGAGACCCCAACCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAGAAGCATTACAAACTCAAATCTCTCTACCCAAACAGAGAGAGGGAGTTTACTAAGATGATTGGAGAGTCTTGGAACAATCTCAACCCAGAAGAACGGATGGTTTACCAGAACATTGGGTTGAAAGACAAAGAAAGATACAAGAGAGAGTTAAAAGAGTATAAGGAGAAAATAAGGATGACAACGAGTACTGATGTGGCTAACCATTCACAGCTTGGAGTAGATGCGAGCGAGAATTCACCTGCTCCACTGAAGTTATATGAGATATAG 1029 43.05 MSPLARSKSWNGMQDKEKEKNYPSALATHDEVIMDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTIRGGHEKVVAEKKWREVGNVFKFSPTTTSASFVLRKHYMSLLYHYEQVYLFGRQGPISTPQAAFSFGSPTSENELALVEYSPKPKSFSPGPPTEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPSPSVSCPQSNNAIIPYTGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLNPEERMVYQNIGLKDKERYKRELKEYKEKIRMTTSTDVANHSQLGVDASENSPAPLKLYEI 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 482414 484395 + evm.model.ptg000002l.1569 HCH12g0090 554937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0090 342 SMART hmgende2 240 309 IPR009071 -
HCH12g0090 342 Pfam ARID/BRIGHT DNA binding domain 39 120 IPR001606 GO:0003677(InterPro)
HCH12g0090 342 Coils Coil 297 317 - -
HCH12g0090 342 MobiDBLite consensus disorder prediction 221 238 - -
HCH12g0090 342 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 321 - -
HCH12g0090 342 MobiDBLite consensus disorder prediction 204 218 - -
HCH12g0090 342 SUPERFAMILY HMG-box 238 312 IPR036910 -
HCH12g0090 342 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
HCH12g0090 342 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677(InterPro)
HCH12g0090 342 CDD HMG-box_AtHMGB9-like 241 307 - -
HCH12g0090 342 MobiDBLite consensus disorder prediction 200 247 - -
HCH12g0090 342 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677(InterPro)
HCH12g0090 342 Gene3D - 11 133 IPR036431 GO:0003677(InterPro)
HCH12g0090 342 Pfam HMG (high mobility group) box 241 308 IPR009071 -
HCH12g0090 342 Gene3D High mobility group box domain 225 326 IPR036910 -
HCH12g0090 342 SMART bright_3 34 125 IPR001606 GO:0003677(InterPro)
HCH12g0090 342 SMART ARID_2 30 120 - -
HCH12g0090 342 SUPERFAMILY ARID-like 29 133 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0090 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0090 HCH-Chr12:482414 HCH6g1418 HCH-Chr6:47984744 3.00E-71 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32643 PF01388 ARID 1.20E-17 CL0123 HCH TR