Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0092 ATGGCTATGGACGATACAGAGAGTTGCAGTAGCAGAGCAGTGGATATTTCCACCACTCAGACTTGGAAACAGAAGCTGAAAGTTGATGTTTACGACGAAGTTCTTCGTAGACTTAGGCAATCGCATGAGGCAGAAACTAGCATTCCTGGTTTTGAAGATGAACTTTGGGCTCATTTTCATCGCCTTCCTACTAGGTATGCCACGGATGTGAATGTGGAGAGGGCTCAAGATGTTCTTATCCATAAAGATTTACTCTTCATGGCACGTGATCCTGCTACTCGACCTGCAATTGATGTTCGTCTCGTGCAGGTTCATTCTACTTCTGGTGGAAACTCGGGCTCAATTCATTTTGACTCCCAGTATCCTAATTATTCCAGCAATCAGAGATGTCACCCTCCACCAGCCTTTGGTTCATCAACAGAAGTTGAATATTGTTTTGAGACCAGCCAATTACATGCTCTAGATCGAGCTGGCACTTTATCCTGGCCAATGCATGAAATTACGATATCAACAATTGACAAGCCAAAGCTTCTCAGTCAGTTGACGTCCTTACTTTCCGAGATTGGCCTGAATATTCAAGAAGCGCATGCTTTTTCAACAATAGATGGCTTTTCCTTGGATGTTTTTGTTGTTGATGGTTGGACAATTGAGGATACCAAGCAGCTGAGAGATGTACTGGCTAAAGAAATATCAAAGATTCAGAAAATGTATCCTCTATTGGCACCGCTAAGCGCTTCCCCTCTTTGGAAGCACGACAAAACTAGAGTCAAGTGCATCACAAAACGAGTCAACATTCCCAGTGATGAAGTTGATGTATGGGAAATTGACGCAACCCTGTTAATCTATGAGATGAAGATTGCTTCTGGATCTTTTGGTGACTTGTATAAAGGCACTTTCTATGGTCAAGACGTGGCTATTAAGCTTCTCAAACATGAAAACTTGAATGAAAATATACGGCGGGAATTTGCTCAAGAAGTTTATATCATGAGGAAAATTCGGCATAAGAATGTTGTTCAATTTGTTGGGGCATGTACCAGACCTCCAAGTTTGTGCATAATCACGGAATACATGTCTGGTGGAAGCATGCACGACTTTTTACATAAACAAAAGGGCGTTCTTAATTTACGATCCTTTCTAAGAGTAGCGGTTGATGTGTCGAAGGGAATGAACTATTTGCATCAAAAGAACATCATCCACAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTTAAGGTAGCTGATTTTGGTATTGCCAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCTGAGGTTATTGAGCATAAACCATACAATCATAGAGCTGATGTTTATAGCTTTGGGATAGTATTGTGGGAGCTGCTTACAGGGCAGCTGCCCTATGAGAACCTGACTCCATTACAAGCAGCAGTAGGCGTGGTCCAGAAGGGTTTGAGGCCTACGATTCCAAGGCAAGCTCATCCAATGATTGCAAACTTGCTCGAAAAATGCTGGCAGCAGGATCCCTCTTTGAGACCCGAATTCTCCGAAATTGTGGAACTTTTACAGCATATGCTCAAGGAGGAACAGATTTCATAA 1620 42.59 MAMDDTESCSSRAVDISTTQTWKQKLKVDVYDEVLRRLRQSHEAETSIPGFEDELWAHFHRLPTRYATDVNVERAQDVLIHKDLLFMARDPATRPAIDVRLVQVHSTSGGNSGSIHFDSQYPNYSSNQRCHPPPAFGSSTEVEYCFETSQLHALDRAGTLSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTIDGFSLDVFVVDGWTIEDTKQLRDVLAKEISKIQKMYPLLAPLSASPLWKHDKTRVKCITKRVNIPSDEVDVWEIDATLLIYEMKIASGSFGDLYKGTFYGQDVAIKLLKHENLNENIRREFAQEVYIMRKIRHKNVVQFVGACTRPPSLCIITEYMSGGSMHDFLHKQKGVLNLRSFLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGIARVQAQSGVMTAETGTYRWMAPEVIEHKPYNHRADVYSFGIVLWELLTGQLPYENLTPLQAAVGVVQKGLRPTIPRQAHPMIANLLEKCWQQDPSLRPEFSEIVELLQHMLKEEQIS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 490808 495676 - evm.model.ptg000002l.1567 HCH12g0092 554939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0092 539 Gene3D Phosphorylase Kinase; domain 1 273 358 - -
HCH12g0092 539 SMART serkin_6 280 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 SUPERFAMILY ACT-like 164 231 IPR045865 -
HCH12g0092 539 PRINTS Tyrosine kinase catalytic domain signature 456 478 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 PRINTS Tyrosine kinase catalytic domain signature 437 447 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 PRINTS Tyrosine kinase catalytic domain signature 500 522 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 PRINTS Tyrosine kinase catalytic domain signature 391 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 PRINTS Tyrosine kinase catalytic domain signature 354 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 SUPERFAMILY Protein kinase-like (PK-like) 262 529 IPR011009 -
HCH12g0092 539 Gene3D - 164 238 - -
HCH12g0092 539 FunFam serine/threonine-protein kinase HT1 359 538 - -
HCH12g0092 539 Pfam Protein tyrosine and serine/threonine kinase 283 529 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 ProSiteProfiles ACT domain profile. 166 244 IPR002912 -
HCH12g0092 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 PANTHER SERINE-THREONINE PROTEIN KINASE 159 532 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH12g0092 539 Gene3D Transferase(Phosphotransferase) domain 1 359 539 - -
HCH12g0092 539 CDD STKc_MAP3K-like 286 529 - -
HCH12g0092 539 ProSiteProfiles Protein kinase domain profile. 280 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0092 539 FunFam Serine/threonine-protein kinase isoform 1 269 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0092 HCH-Chr12:490808 HCH13g0225 HCH-Chr13:1470369 6.30E-132 dispersed
HCH6g1239 HCH-Chr6:46774570 HCH12g0092 HCH-Chr12:490808 3.20E-41 transposed
HCH12g0092 HCH-Chr12:490808 HCH13g1320 HCH-Chr13:41142912 1.90E-184 wgd
HCH12g0092 HCH-Chr12:490808 HCH7g0439 HCH-Chr7:3248409 2.20E-201 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81095 PF07714 PK_Tyr_Ser-Thr 1.10E-75 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0092 - - - 0.0