Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0092 | ATGGCTATGGACGATACAGAGAGTTGCAGTAGCAGAGCAGTGGATATTTCCACCACTCAGACTTGGAAACAGAAGCTGAAAGTTGATGTTTACGACGAAGTTCTTCGTAGACTTAGGCAATCGCATGAGGCAGAAACTAGCATTCCTGGTTTTGAAGATGAACTTTGGGCTCATTTTCATCGCCTTCCTACTAGGTATGCCACGGATGTGAATGTGGAGAGGGCTCAAGATGTTCTTATCCATAAAGATTTACTCTTCATGGCACGTGATCCTGCTACTCGACCTGCAATTGATGTTCGTCTCGTGCAGGTTCATTCTACTTCTGGTGGAAACTCGGGCTCAATTCATTTTGACTCCCAGTATCCTAATTATTCCAGCAATCAGAGATGTCACCCTCCACCAGCCTTTGGTTCATCAACAGAAGTTGAATATTGTTTTGAGACCAGCCAATTACATGCTCTAGATCGAGCTGGCACTTTATCCTGGCCAATGCATGAAATTACGATATCAACAATTGACAAGCCAAAGCTTCTCAGTCAGTTGACGTCCTTACTTTCCGAGATTGGCCTGAATATTCAAGAAGCGCATGCTTTTTCAACAATAGATGGCTTTTCCTTGGATGTTTTTGTTGTTGATGGTTGGACAATTGAGGATACCAAGCAGCTGAGAGATGTACTGGCTAAAGAAATATCAAAGATTCAGAAAATGTATCCTCTATTGGCACCGCTAAGCGCTTCCCCTCTTTGGAAGCACGACAAAACTAGAGTCAAGTGCATCACAAAACGAGTCAACATTCCCAGTGATGAAGTTGATGTATGGGAAATTGACGCAACCCTGTTAATCTATGAGATGAAGATTGCTTCTGGATCTTTTGGTGACTTGTATAAAGGCACTTTCTATGGTCAAGACGTGGCTATTAAGCTTCTCAAACATGAAAACTTGAATGAAAATATACGGCGGGAATTTGCTCAAGAAGTTTATATCATGAGGAAAATTCGGCATAAGAATGTTGTTCAATTTGTTGGGGCATGTACCAGACCTCCAAGTTTGTGCATAATCACGGAATACATGTCTGGTGGAAGCATGCACGACTTTTTACATAAACAAAAGGGCGTTCTTAATTTACGATCCTTTCTAAGAGTAGCGGTTGATGTGTCGAAGGGAATGAACTATTTGCATCAAAAGAACATCATCCACAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTTAAGGTAGCTGATTTTGGTATTGCCAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCTGAGGTTATTGAGCATAAACCATACAATCATAGAGCTGATGTTTATAGCTTTGGGATAGTATTGTGGGAGCTGCTTACAGGGCAGCTGCCCTATGAGAACCTGACTCCATTACAAGCAGCAGTAGGCGTGGTCCAGAAGGGTTTGAGGCCTACGATTCCAAGGCAAGCTCATCCAATGATTGCAAACTTGCTCGAAAAATGCTGGCAGCAGGATCCCTCTTTGAGACCCGAATTCTCCGAAATTGTGGAACTTTTACAGCATATGCTCAAGGAGGAACAGATTTCATAA | 1620 | 42.59 | MAMDDTESCSSRAVDISTTQTWKQKLKVDVYDEVLRRLRQSHEAETSIPGFEDELWAHFHRLPTRYATDVNVERAQDVLIHKDLLFMARDPATRPAIDVRLVQVHSTSGGNSGSIHFDSQYPNYSSNQRCHPPPAFGSSTEVEYCFETSQLHALDRAGTLSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTIDGFSLDVFVVDGWTIEDTKQLRDVLAKEISKIQKMYPLLAPLSASPLWKHDKTRVKCITKRVNIPSDEVDVWEIDATLLIYEMKIASGSFGDLYKGTFYGQDVAIKLLKHENLNENIRREFAQEVYIMRKIRHKNVVQFVGACTRPPSLCIITEYMSGGSMHDFLHKQKGVLNLRSFLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGIARVQAQSGVMTAETGTYRWMAPEVIEHKPYNHRADVYSFGIVLWELLTGQLPYENLTPLQAAVGVVQKGLRPTIPRQAHPMIANLLEKCWQQDPSLRPEFSEIVELLQHMLKEEQIS | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 490808 | 495676 | - | evm.model.ptg000002l.1567 | HCH12g0092 | 554939 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0092 | 539 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 358 | - | - | |
HCH12g0092 | 539 | SMART | serkin_6 | 280 | 533 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | SUPERFAMILY | ACT-like | 164 | 231 | IPR045865 | - | |
HCH12g0092 | 539 | PRINTS | Tyrosine kinase catalytic domain signature | 456 | 478 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | PRINTS | Tyrosine kinase catalytic domain signature | 437 | 447 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | PRINTS | Tyrosine kinase catalytic domain signature | 500 | 522 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | PRINTS | Tyrosine kinase catalytic domain signature | 391 | 409 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | PRINTS | Tyrosine kinase catalytic domain signature | 354 | 367 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | SUPERFAMILY | Protein kinase-like (PK-like) | 262 | 529 | IPR011009 | - | |
HCH12g0092 | 539 | Gene3D | - | 164 | 238 | - | - | |
HCH12g0092 | 539 | FunFam | serine/threonine-protein kinase HT1 | 359 | 538 | - | - | |
HCH12g0092 | 539 | Pfam | Protein tyrosine and serine/threonine kinase | 283 | 529 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | ProSiteProfiles | ACT domain profile. | 166 | 244 | IPR002912 | - | |
HCH12g0092 | 539 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 397 | 409 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 159 | 532 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
HCH12g0092 | 539 | Gene3D | Transferase(Phosphotransferase) domain 1 | 359 | 539 | - | - | |
HCH12g0092 | 539 | CDD | STKc_MAP3K-like | 286 | 529 | - | - | |
HCH12g0092 | 539 | ProSiteProfiles | Protein kinase domain profile. | 280 | 533 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g0092 | 539 | FunFam | Serine/threonine-protein kinase isoform 1 | 269 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0092 | HCH-Chr12:490808 | HCH13g0225 | HCH-Chr13:1470369 | 6.30E-132 | dispersed | |
HCH6g1239 | HCH-Chr6:46774570 | HCH12g0092 | HCH-Chr12:490808 | 3.20E-41 | transposed | |
HCH12g0092 | HCH-Chr12:490808 | HCH13g1320 | HCH-Chr13:41142912 | 1.90E-184 | wgd | |
HCH12g0092 | HCH-Chr12:490808 | HCH7g0439 | HCH-Chr7:3248409 | 2.20E-201 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81095 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-75 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0092 | - | - | - | 0.0 |