Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0103 | ATGGCCCAAACGACACCAAACCACACACAAACGGTCTCTGGTTGGGCAGCTCATGATTCTTCCGGCAAGATCACTCCTTTTACTTTTAAACGCAGAGAAAACGGTCCCAACGACGTGACGATAGACATAAAATATTGTGGGATATGCCACACTGATCTCCACTATGCCAGGAACGACTGGGGCATTACCATGTATCCTGTAGTCCCTGGGCATGAAATGACTGGGGTGATCACGAAAGTGGGAAGCAACGTACAGAAGTTCAAGATAGGTGATAAGGTGGGTGTAGGTTGTATCGCAGCGTCATGCTTGAACTGCGAATTCTGCAACGACTCCAAGGAAAACTACTGTGAAAATCTGCAGTTTTCCTACAACGGCATATTCTGGGATGGCAGTATAACCTATGGCGGATACTCTAAAATGTTTGTTTCAGATTACAGGTATGTGGTTCATATACCGGAGAACCTGCCGATGCACGCGGCGGCACCGTTGCTATGTGCTGGGATTTCAGTGTTCAATCCGATGAAAGACCACGGTCTGATTGATTCGCCAAGGAAGAAGATAGGAGTGGTGGGTCTTGGAGGTCTTGGTCACATAGCAGTCAAATTTGGGAAAGCGCTTGGCCACCACGTGACAGTAATCAGCACGTCTGCTTCCAAGGAAAAAGAGGCTAAACAGCGGCTGGGTGCTGATGATTTCATAGTCAGCAAAAATCCTCAACAGATGCAGGCTTGTAGAAGGACAATGGATTTCATATTGGACACAGTATCAGCAGAGCATTCGATTGGACCAATACTAGAATCGCTCAAAGTGAATGGGACGCTGGCGATCGTGGGCGCTCCCGATAAGCCCATACAACTCCCTTCTTTCCCATTAATATTTGGAAAAAGGACAGTGAAAGGTAGCATAATAGGAGGAATACAAGAGACGCAAGAGATGATGGATTTGTGCGGGAAACACAATATCTTTTGTGATATTGAAGTGATCAAGCCAGATAATATCAATGAGGCAATGGAACGTCTCTTAAAAAACGATGTACGATACCGATTCGTCATCGATATCGCTCAAGACGTATCCAAATCTAGACTATGA | 1089 | 45.73 | MAQTTPNHTQTVSGWAAHDSSGKITPFTFKRRENGPNDVTIDIKYCGICHTDLHYARNDWGITMYPVVPGHEMTGVITKVGSNVQKFKIGDKVGVGCIAASCLNCEFCNDSKENYCENLQFSYNGIFWDGSITYGGYSKMFVSDYRYVVHIPENLPMHAAAPLLCAGISVFNPMKDHGLIDSPRKKIGVVGLGGLGHIAVKFGKALGHHVTVISTSASKEKEAKQRLGADDFIVSKNPQQMQACRRTMDFILDTVSAEHSIGPILESLKVNGTLAIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKHNIFCDIEVIKPDNINEAMERLLKNDVRYRFVIDIAQDVSKSRL | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 541546 | 543359 | - | evm.model.ptg000002l.1556 | HCH12g0103 | 554950 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0103 | 362 | Gene3D | - | 15 | 353 | - | - | |
HCH12g0103 | 362 | PANTHER | ALDEHYDE REDUCTASE | 7 | 355 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
HCH12g0103 | 362 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 155 | 321 | IPR036291 | - | |
HCH12g0103 | 362 | FunFam | Putative cinnamyl alcohol dehydrogenase 6 | 324 | 353 | - | - | |
HCH12g0103 | 362 | FunFam | Cinnamyl alcohol dehydrogenase | 166 | 323 | - | - | |
HCH12g0103 | 362 | FunFam | probable cinnamyl alcohol dehydrogenase | 15 | 174 | - | - | |
HCH12g0103 | 362 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 153 | IPR013154 | - | |
HCH12g0103 | 362 | Pfam | Zinc-binding dehydrogenase | 194 | 316 | IPR013149 | - | |
HCH12g0103 | 362 | SMART | PKS_ER_names_mod | 19 | 351 | IPR020843 | GO:0016491(InterPro) | |
HCH12g0103 | 362 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) | |
HCH12g0103 | 362 | Gene3D | - | 166 | 323 | - | - | |
HCH12g0103 | 362 | SUPERFAMILY | GroES-like | 17 | 180 | IPR011032 | - | |
HCH12g0103 | 362 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 70 | 84 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0103 | HCH-Chr12:541546 | HCH2g0167 | HCH-Chr2:12912715 | 3.20E-124 | dispersed | |
HCH12g0103 | HCH-Chr12:541546 | HCH4g1853 | HCH-Chr4:48358294 | 8.30E-96 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0103 | K00083 | - | csv:101213170 | 638.262 |