Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0103 ATGGCCCAAACGACACCAAACCACACACAAACGGTCTCTGGTTGGGCAGCTCATGATTCTTCCGGCAAGATCACTCCTTTTACTTTTAAACGCAGAGAAAACGGTCCCAACGACGTGACGATAGACATAAAATATTGTGGGATATGCCACACTGATCTCCACTATGCCAGGAACGACTGGGGCATTACCATGTATCCTGTAGTCCCTGGGCATGAAATGACTGGGGTGATCACGAAAGTGGGAAGCAACGTACAGAAGTTCAAGATAGGTGATAAGGTGGGTGTAGGTTGTATCGCAGCGTCATGCTTGAACTGCGAATTCTGCAACGACTCCAAGGAAAACTACTGTGAAAATCTGCAGTTTTCCTACAACGGCATATTCTGGGATGGCAGTATAACCTATGGCGGATACTCTAAAATGTTTGTTTCAGATTACAGGTATGTGGTTCATATACCGGAGAACCTGCCGATGCACGCGGCGGCACCGTTGCTATGTGCTGGGATTTCAGTGTTCAATCCGATGAAAGACCACGGTCTGATTGATTCGCCAAGGAAGAAGATAGGAGTGGTGGGTCTTGGAGGTCTTGGTCACATAGCAGTCAAATTTGGGAAAGCGCTTGGCCACCACGTGACAGTAATCAGCACGTCTGCTTCCAAGGAAAAAGAGGCTAAACAGCGGCTGGGTGCTGATGATTTCATAGTCAGCAAAAATCCTCAACAGATGCAGGCTTGTAGAAGGACAATGGATTTCATATTGGACACAGTATCAGCAGAGCATTCGATTGGACCAATACTAGAATCGCTCAAAGTGAATGGGACGCTGGCGATCGTGGGCGCTCCCGATAAGCCCATACAACTCCCTTCTTTCCCATTAATATTTGGAAAAAGGACAGTGAAAGGTAGCATAATAGGAGGAATACAAGAGACGCAAGAGATGATGGATTTGTGCGGGAAACACAATATCTTTTGTGATATTGAAGTGATCAAGCCAGATAATATCAATGAGGCAATGGAACGTCTCTTAAAAAACGATGTACGATACCGATTCGTCATCGATATCGCTCAAGACGTATCCAAATCTAGACTATGA 1089 45.73 MAQTTPNHTQTVSGWAAHDSSGKITPFTFKRRENGPNDVTIDIKYCGICHTDLHYARNDWGITMYPVVPGHEMTGVITKVGSNVQKFKIGDKVGVGCIAASCLNCEFCNDSKENYCENLQFSYNGIFWDGSITYGGYSKMFVSDYRYVVHIPENLPMHAAAPLLCAGISVFNPMKDHGLIDSPRKKIGVVGLGGLGHIAVKFGKALGHHVTVISTSASKEKEAKQRLGADDFIVSKNPQQMQACRRTMDFILDTVSAEHSIGPILESLKVNGTLAIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKHNIFCDIEVIKPDNINEAMERLLKNDVRYRFVIDIAQDVSKSRL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 541546 543359 - evm.model.ptg000002l.1556 HCH12g0103 554950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0103 362 Gene3D - 15 353 - -
HCH12g0103 362 PANTHER ALDEHYDE REDUCTASE 7 355 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
HCH12g0103 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
HCH12g0103 362 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
HCH12g0103 362 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
HCH12g0103 362 FunFam probable cinnamyl alcohol dehydrogenase 15 174 - -
HCH12g0103 362 Pfam Alcohol dehydrogenase GroES-like domain 35 153 IPR013154 -
HCH12g0103 362 Pfam Zinc-binding dehydrogenase 194 316 IPR013149 -
HCH12g0103 362 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491(InterPro)
HCH12g0103 362 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
HCH12g0103 362 Gene3D - 166 323 - -
HCH12g0103 362 SUPERFAMILY GroES-like 17 180 IPR011032 -
HCH12g0103 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0103 HCH-Chr12:541546 HCH2g0167 HCH-Chr2:12912715 3.20E-124 dispersed
HCH12g0103 HCH-Chr12:541546 HCH4g1853 HCH-Chr4:48358294 8.30E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0103 K00083 - csv:101213170 638.262