Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0105 ATGCAAGGCATTTCTTTTTCCTTCTTCCTTTTCGTTGTCGTCGTCTTCCTTATTTCTGCACAAGGTAAACGAGCAGCCGCAGCCGGCAAGAATGGTGTTTATATTGTCTATATGGGAGCGGCATCTACCCCGCATGGCTCATTGAGAACCGACTATCTTCGGCTTCTCAACTCGGTGGCCAGGAAACGAATAAAAGTGGTGCACACGTATAAACATGGCTTCTCGGGATTTGCAGCTCGTCTATCAGAACAGGAAGCCAAGGCCATGAGACAGAGACCTGGAGTTGTTTCTGTTTTTCCAGACCCCCTATTGAAATTGCACACTACTCATTCATGGGATTTCTTAATCAGTCAGACAAGTATAAAGATCGACGCCAAACCCAAATCTGATATCTCTGGCTCTTCTTCTCAAGCATCCGACTCTATTATCGGCATCTTAGACACCGGTGTATGGCCTGAATCAGAGAGTTTTAGTGATGAGGGTATGGGTCCTATACCGTCAAGATGGAAAGGAGTTTGCATGCATGGCGATGATTTCAACTCCTCAAACTGTAACAGAAAACTCATTGGAGCAAGATTCTACGATCATTCTGATGACGGCGGGTTTCAGTTCCATTCACCTCGGGATGATGCTGGCCATGGTACACATGTAGCTTCAACAGCTGCCGGCAGCGCCGTGTCTAATGCATCGTACTATGGGCTTGCCGCGGGGACGGCCAAGGGTGGATCCCCCAAGTCGAGGATTGCTATGTATCGAGTATGTACAGTTCAAGGCTGCACTGGATCAGCCATCATGGCAGCCTTTGATGATGCGATCGCTGATGGTGTCAATGTGTTATCGTTATCGCTTGGTTCACCGTATTTCTTTAAACAGGAATTGAAAGATGACCCGATTGCGATCGGAGCTTTTCATGCAGTGGAGAAGGGGATTATAGTCGTCTGCTCTGCGGGAAACGACGGCCCCGTCACAGCATCAGTGGTGAATGACGCACCATGGATTTTAACCGTGGCTGCATCCACCATTGATCGGGATTTCGAGTCCAACGTTGTGTTGGGCAATAACAAAGTAATCAAGGGAGAAGGTATAAATTTCTCTGCTCTCCAAAAATCTGCTACATATCCACTGATACAGGGAAAGTCAGCCAAGAAGTGGAATGACAGTGAAGATGAAGGAGCTAGGGTTTGTAACGAATCATCAATGGACGGAAATTTGGTGAAGGGGAAGATAGTGATATGTGAGACTATTGAAGGACAAGGTCCGTCTTGGGAACTTAGAGTTGAAGCAGTGAAGAATCTTGGAGGGGTTGGCATAGTTTTCATTAATGATGAATCAAAATTAGTTGCAGATAAGTTTGGTTATTTTCCCATGACAGCTATTAGTTCAAAAGATGGCGATGAGGTCCTCTCTTATGCCAACTCAACCAGGAACCCACTCGCTACAATCCTACCCACCGTGACCGTAATAAAATACAAGCCAGCGCCTGCTGTAGCATATTTTTCATCCAGAGGACCTAACCCTGCTGCACTAAATATACTCAAGCCTGATATATTAGCACCAGGAGTGAACATTCTTGCAGCCTGGCTAGGCAATGACACGGCGGCTTCTCTAGAAGGAAAACCACCTCCACTCTTCAACGTGCTCTCAGGAACTTCAATGGCCTGCCCTCACGTCTCTGGTGTTGCAGCCTTTGTTAAATCTCAAAACCCCTCATGGGGTCCCTCAGCAATCAGGTCAGCTATCATGACAACAGCAATCCAAACAAATAACCTAGGATCTCCAGTCACAACAGATTCCGGGTCACTTGCGACGCCTTTTGATTATGGGGCCGGAGAAGTATCGACAACTGGACCATTACAACCCGGCCTTGTCTACGAAACCAGTACAATAGACTACTTAAACTATCTTTGCTACCGTGGTTACGACCTTCCCACCGTTAAGATGATCTCCCAAACAGTTCCAAATGACTTTGTCTGCCCAAAGAATTCGACTGCCGATATATCTAATATCAACTATCCATCAATAGCAGTGTCCGAAATGAAAGGTAAGGAAAGCAAGACAGTAAGCAGGACAGTTACAAATGTTGGTGGCGATGGTGAAACAGTTTACACAGTCAGTGTGGAGGCACCTAGTGAAGTAGAAGTTAAGGTGATTCCAGAGAAACTGGAATTCACAAAGAACAACCAAAAGCAGAGTTACCAAGTGGTCTTCACCTCAACTGCAGCCACTCCAAAGGATGAACTCTTTGGATCAATTACTTGGACCAACGGAAAATATCGTGTTCGGAGTCCATTTGTTGTAAGTAGTAAAAGTAGTGAGGACGATTATTACTCATAA 2334 45.8 MQGISFSFFLFVVVVFLISAQGKRAAAAGKNGVYIVYMGAASTPHGSLRTDYLRLLNSVARKRIKVVHTYKHGFSGFAARLSEQEAKAMRQRPGVVSVFPDPLLKLHTTHSWDFLISQTSIKIDAKPKSDISGSSSQASDSIIGILDTGVWPESESFSDEGMGPIPSRWKGVCMHGDDFNSSNCNRKLIGARFYDHSDDGGFQFHSPRDDAGHGTHVASTAAGSAVSNASYYGLAAGTAKGGSPKSRIAMYRVCTVQGCTGSAIMAAFDDAIADGVNVLSLSLGSPYFFKQELKDDPIAIGAFHAVEKGIIVVCSAGNDGPVTASVVNDAPWILTVAASTIDRDFESNVVLGNNKVIKGEGINFSALQKSATYPLIQGKSAKKWNDSEDEGARVCNESSMDGNLVKGKIVICETIEGQGPSWELRVEAVKNLGGVGIVFINDESKLVADKFGYFPMTAISSKDGDEVLSYANSTRNPLATILPTVTVIKYKPAPAVAYFSSRGPNPAALNILKPDILAPGVNILAAWLGNDTAASLEGKPPPLFNVLSGTSMACPHVSGVAAFVKSQNPSWGPSAIRSAIMTTAIQTNNLGSPVTTDSGSLATPFDYGAGEVSTTGPLQPGLVYETSTIDYLNYLCYRGYDLPTVKMISQTVPNDFVCPKNSTADISNINYPSIAVSEMKGKESKTVSRTVTNVGGDGETVYTVSVEAPSEVEVKVIPEKLEFTKNNQKQSYQVVFTSTAATPKDELFGSITWTNGKYRVRSPFVVSSKSSEDDYYS 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 559257 562663 + evm.model.ptg000002l.1554 HCH12g0105 554952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0105 777 Gene3D - 635 769 - -
HCH12g0105 777 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
HCH12g0105 777 PRINTS Subtilisin serine protease family (S8) signature 209 222 IPR015500 -
HCH12g0105 777 PRINTS Subtilisin serine protease family (S8) signature 548 564 IPR015500 -
HCH12g0105 777 SUPERFAMILY Protease propeptides/inhibitors 51 103 - -
HCH12g0105 777 ProSitePatterns Serine proteases, subtilase family, histidine active site. 213 223 IPR022398 -
HCH12g0105 777 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 107 IPR037045 -
HCH12g0105 777 Pfam PA domain 392 466 IPR003137 -
HCH12g0105 777 FunFam Subtilisin-like protease SBT1.5 140 353 - -
HCH12g0105 777 Gene3D - 342 488 - -
HCH12g0105 777 FunFam subtilisin-like protease SBT1.5 342 488 - -
HCH12g0105 777 Pfam Subtilase family 141 610 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH12g0105 777 CDD Peptidases_S8_3 104 585 IPR034197 -
HCH12g0105 777 ProSiteProfiles Serine proteases, subtilase domain profile. 111 618 - -
HCH12g0105 777 Pfam Fibronectin type-III domain 668 766 IPR041469 -
HCH12g0105 777 Pfam Peptidase inhibitor I9 33 107 IPR010259 -
HCH12g0105 777 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 764 IPR045051 -
HCH12g0105 777 SUPERFAMILY Subtilisin-like 136 618 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH12g0105 777 CDD PA_subtilisin_like 348 481 - -
HCH12g0105 777 ProSitePatterns Serine proteases, subtilase family, serine active site. 549 559 IPR023828 -
HCH12g0105 777 Gene3D Peptidase S8/S53 domain 141 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0105 HCH-Chr12:559257 HCH3g1044 HCH-Chr3:14891858 5.60E-150 dispersed
HCH4g0176 HCH-Chr4:1019481 HCH12g0105 HCH-Chr12:559257 2.40E-188 transposed
HCH6g1198 HCH-Chr6:46399040 HCH12g0105 HCH-Chr12:559257 1.50E-48 transposed
HCH12g0105 HCH-Chr12:559257 HCH2g0544 HCH-Chr2:49248762 1.40E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0105 K25898 - csv:101213415 1119.38