Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0112 ATGAGAAAATCTCTGAATCCTTCCACTTTCTTTTACCTCATTTTCACTTCCTCCTTCTACTTCTCCTTCGCAAGCCATGATTTAGAGGCACTATTACAAATTAAACGTGCAATAATAATAACACCACCAGGAAAATCAGCCCTCCACGACTGGGTTCCATCGTCATTAGAATCCGGTCACTGCAATTTCTCCGGAGTATCCTGCGACGATGATTCAAGAGTGGTTGCTCTAAACATATCAAACACTCCACTTATGACCTCAATCCCACCAGAAATTGGCTTATTACAAAACCTCATAAACCTTACACTCGTTAACAACAATCTGACCGGAATTCTCCCCGTCGAAATGTCGAAACTCACATATCTCAGAATCCTTAACCTCTCCAATAACGCATTCCACGGGAATTTCCCAACGGAAATCACGCTCGGAATGACACAACTCGAAGCTGTCGATGTTTACAACAATAACTTCTCTGGAACACTTCCGGTCGGCCTTACCCATCTCAAGAATCTGAAACATTTAGACCTCGGCGGTTGCTTCTTTTCCGGTCCGATTCCGGATGATATCTCGATGATGGAAAAGTTGGAGTTTTTAAGCGTGCGTGGTAATACACTCACTGGGAAATTACCGCCGAGTATGGCACGGTTAAAAAATCTTAAATATCTCTACGCTGGTTATTTTAACCGTTACGATGGTGGAATTCCTCACGAGTTTGGATTGCTGGATTCTCTTGAACTTATTGACTTGGGTTATTGTAACCTCACGGGTGAAATTCCTGTGACTTTGGGTAAATTAAAGAATTTGCATTCTTTATTTTTACAAATAAATAATCTTACGGGCTATATTCCGGCGGAGCTTTCTGGATTGATCAGTCTTAAATCTCTAGACCTTTCGTTCAATGAATTAACGGGAGAAATACCGGGGAGTTTTTCAGCGCTTCAAAATCTGACGTTGATTAATTTGTTTAACAACAAATTTCACGGTCCGATTCCTGGGTTCGTCGGTGATTATCCAAATCTTGAAGTGCTTCAGTTATGGAATAATAATTTCACGCTTGAGCTACCTGAGAGTCTTGGACGTAACGGGAAGCTGTTTCTTCTCGACGTGACGTCGAATCATTTAACGGGAATTTTACCTCCGGATTTATGTAAAGGTGGATTGAAGATTTTGATTTTGATGGAAAATTATTTCTTTGGGCCTATTCCTGAGGGTCTAGGGCAGTGTTCTTCGTTGACGAAAATCAGAATTTCTGGCAATTACTTCAACGGTACGATTCCGCCGGGAATTTTCACTTTGCCGGAGTTGTCTTTTCTTGATGTGAGTGATAATTTCATTACCGGGAATCTTCCGTCTCAAATGTCCGGGGACTCTCTTGGATATCTTACGCTCAGTAACAATCGTATCTCCGGTAAAATCCCGCCGGCGATCAAGAATTTCAAAAACTTGCAAGTTTTGTCACTGGAAAACAACGAATTCACTGGAGATTTACCGATGGAGTTATTCGAAATTCATATTCTGCAGAGGATTAATATCAGCGCTAACAAAATCACCGGCGGAATTCCGAATTCGATCATTCTCTCCACATCATTAACTTCAATCGATCTCAGCCAAAACCGCCTCACCGGCCAAATCCCGAAAGGAATTTCGAAGCTGAAAATCTTGAGCGTTTTCAACGTATCAGGAAATCAAATAACCGGTCCGATTCCGACCGAGATTCGTTCCATGATGAGTCTCACAACTCTCGATTTCTCATACAACAATTTCCTCGGCAAAATCCCCACCGGCGGTCAATTCTCCGTTTTCAATTACACCGCATTCACCGGAAACCCTAACCTCTGTTTCGCAAACCATAACCCTTGCCCTTATCTAATGAATTCAAATCAAGCCCTAGACAATTCCCACAAGAAACTAAATTCCACAAACCTAATGATCCCAATCGTGACGATTTTCACAATCCTCTCATGTATCTTAATCACAGTTTACATCCGAAAGAAAAACAAGCATCAGAAATCCATGGCATGGAAACTCACAGCATTCCAACGGCTCGATTTCAAAGCCGAAGACGTTCTCGCTTGTTTAAAAGACGATAACATAATCGGCAAAGGCGGGGCCGGCGTCGTTTATCGAGGGTCAATGCCGGACGGAAGTGACGTGGCGATTAAGTTATTGTTAGGAAGCGGAAGAAACGATCACGGTTTTTCGGCGGAGATACAGACGCTGGGGAGAATAAGGCATCGGAATATCGTACGGCTATTGGGATACGTGTCGAATAAAGAAAGGAATTTGTTGTTGTATGAATATATGGGGAATGGGAGTTTGGATGAGAGATTGCATGGGGTTAAAGGAGGCCAATTGGGGTGGGATTTGAGGTATAAGATTGCTGTTGAAGCTGCGAGAGGGCTTTGCTATTTGCATCATGATTGCACGCCGTTGATTATTCATCGAGATGTTAAATCCAATAATATTTTGTTGGATCATTACTTTGAGGCCCATGTTTCTGATTTTGGTCTCGCTAAGTTCTTGCAAAATAGTGGGGCGTCTGAGTGTATGTCCTCCATTGCTGGCTCTTATGGCTATATCGCTCCAGAGTATGCTTACACACTGAAAGTCGACGAGAAGAGTGACGTGTACAGCTTCGGCGTGGTATTGCTGGAGCTAATAGCAGGAAGGAAGCCAGTGGGTGATTTTGGAGATGGAGTGGATATTGTGAGATGGGTGATGAAAACGACATCAGAACTGTCTCAGCCGTCTGATGCAGCATCGGTATTAGCAGTGGTGGACTCGAGGCTGAGCCAATACCCATTGCAGAGCGTGATTCACTTGTTCAAAATAGCGATGATGTGCGTTGAGGAAGAGAGTTCTGCAAGGCCAACCATGAGGGAAGTCGTCCACATGCTTACTAATCCTCCACGCTCTGCTCCTCCTGTCATCAACCTTTGA 2940 43.3 MRKSLNPSTFFYLIFTSSFYFSFASHDLEALLQIKRAIIITPPGKSALHDWVPSSLESGHCNFSGVSCDDDSRVVALNISNTPLMTSIPPEIGLLQNLINLTLVNNNLTGILPVEMSKLTYLRILNLSNNAFHGNFPTEITLGMTQLEAVDVYNNNFSGTLPVGLTHLKNLKHLDLGGCFFSGPIPDDISMMEKLEFLSVRGNTLTGKLPPSMARLKNLKYLYAGYFNRYDGGIPHEFGLLDSLELIDLGYCNLTGEIPVTLGKLKNLHSLFLQINNLTGYIPAELSGLISLKSLDLSFNELTGEIPGSFSALQNLTLINLFNNKFHGPIPGFVGDYPNLEVLQLWNNNFTLELPESLGRNGKLFLLDVTSNHLTGILPPDLCKGGLKILILMENYFFGPIPEGLGQCSSLTKIRISGNYFNGTIPPGIFTLPELSFLDVSDNFITGNLPSQMSGDSLGYLTLSNNRISGKIPPAIKNFKNLQVLSLENNEFTGDLPMELFEIHILQRINISANKITGGIPNSIILSTSLTSIDLSQNRLTGQIPKGISKLKILSVFNVSGNQITGPIPTEIRSMMSLTTLDFSYNNFLGKIPTGGQFSVFNYTAFTGNPNLCFANHNPCPYLMNSNQALDNSHKKLNSTNLMIPIVTIFTILSCILITVYIRKKNKHQKSMAWKLTAFQRLDFKAEDVLACLKDDNIIGKGGAGVVYRGSMPDGSDVAIKLLLGSGRNDHGFSAEIQTLGRIRHRNIVRLLGYVSNKERNLLLYEYMGNGSLDERLHGVKGGQLGWDLRYKIAVEAARGLCYLHHDCTPLIIHRDVKSNNILLDHYFEAHVSDFGLAKFLQNSGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGDGVDIVRWVMKTTSELSQPSDAASVLAVVDSRLSQYPLQSVIHLFKIAMMCVEEESSARPTMREVVHMLTNPPRSAPPVINL 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 596364 599786 + evm.model.ptg000002l.1547 HCH12g0112 554959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0112 979 Gene3D Transferase(Phosphotransferase) domain 1 768 973 - -
HCH12g0112 979 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 458 479 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 577 594 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 339 360 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 481 500 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 410 431 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Pfam Leucine Rich Repeat 170 190 IPR001611 GO:0005515(InterPro)
HCH12g0112 979 Gene3D Phosphorylase Kinase; domain 1 657 767 - -
HCH12g0112 979 Pfam Protein tyrosine and serine/threonine kinase 696 966 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0112 979 SUPERFAMILY Protein kinase-like (PK-like) 689 966 IPR011009 -
HCH12g0112 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0112 979 SUPERFAMILY RNI-like 276 616 - -
HCH12g0112 979 Gene3D Ribonuclease Inhibitor 143 227 IPR032675 -
HCH12g0112 979 FunFam Leucine-rich repeat receptor-like protein kinase 24 187 - -
HCH12g0112 979 Pfam Leucine rich repeat N-terminal domain 25 69 IPR013210 -
HCH12g0112 979 SUPERFAMILY L domain-like 58 379 - -
HCH12g0112 979 FunFam Leucine-rich repeat receptor-like protein kinase TDR 310 622 - -
HCH12g0112 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 977 - -
HCH12g0112 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 366 967 IPR051564 GO:0016020(PANTHER)
HCH12g0112 979 SMART serkin_6 693 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0112 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 226 306 - -
HCH12g0112 979 Gene3D Ribonuclease Inhibitor 387 623 IPR032675 -
HCH12g0112 979 Gene3D Ribonuclease Inhibitor 228 386 IPR032675 -
HCH12g0112 979 Gene3D Ribonuclease Inhibitor 26 142 IPR032675 -
HCH12g0112 979 ProSiteProfiles Protein kinase domain profile. 693 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0112 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 662 767 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0112 HCH-Chr12:596364 HCH14g1204 HCH-Chr14:38644274 4.60E-117 dispersed
HCH12g0112 HCH-Chr12:596364 HCH14g0409 HCH-Chr14:33102975 1.30E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81097 PF07714 PK_Tyr_Ser-Thr 8.60E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0112 - - - 0.0