Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0114 | ATGGACGGACAAATATCATTCATTACCCATCTTCTAACTTTCCAAATACTGATATCAGGAGTATTATCAACAACGTTCAGTTTTGTAAACCAATGCCAGTACACAGTATGGCCTGGAATTCTCACAAACGCCGGCGTTCCACCACTTCCCACCACCGGCTTTGTTCTCCAGAAAGGAGAATCTAAGACAATTTCTGCTCCGGCATCATGGGGTGGTCGTTTCTGGGGTCGAACCCTCTGTTCCCAAGATTCCACCGGCAAATTCTCTTGCATCACCGCTGATTGTGGCTCCGGTAAGATTGATTGCGCCGGAAATGGCGCCAAGCCGCCAGCGACTTTAGCCGAATTCACTCTCGACGGCGCCGGAGGACTCGATTTCTTTGACGTTAGTTTGGTCGACGGCTACAATATCCCTATGCTCGTCGTTCCCCAAGGTGGTTCCGGCGAGAAATGCACCAGTACCGGCTGTGTGGTGGACTTGAACGGCTCGTGTCCTTCAGAACTCAAAGTAACGAGCGTGGAGGGAGGAGAAGGGGTGGCTTGTAAGAGCGCGTGTGAAGCCTTTAATCAGCCTCAGTATTGTTGTAGTGGCGCGTACGGTACACCCGATACTTGCAAGCCATCTCCATACTCTCAGGTTTTCAAGAACGCGTGTCCACGCGCTTACAGCTATGCTTACGACGACCAGACCAGTACCTTCACATGTCTCGACGCCGACTATATCATTACATTTTGCCCTTCCCTCAGTCCCAGCCAGAAGTCGTCAGATGGGCACAACGCAAACTCGCCGCTGATCAACGGCACGATGGTCTACGAAGGAGCTAAATTTGATCAAAGTGGAGCTTCTCCCACAACTCTCACCCCTCTCGTCGCCTTAGTCACCGTCGCAGTTGCCCTTCTTCAATTTCGGCACCTCTTTTGA | 921 | 51.36 | MDGQISFITHLLTFQILISGVLSTTFSFVNQCQYTVWPGILTNAGVPPLPTTGFVLQKGESKTISAPASWGGRFWGRTLCSQDSTGKFSCITADCGSGKIDCAGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGSGEKCTSTGCVVDLNGSCPSELKVTSVEGGEGVACKSACEAFNQPQYCCSGAYGTPDTCKPSPYSQVFKNACPRAYSYAYDDQTSTFTCLDADYIITFCPSLSPSQKSSDGHNANSPLINGTMVYEGAKFDQSGASPTTLTPLVALVTVAVALLQFRHLF | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 608954 | 610739 | - | evm.model.ptg000002l.1545 | HCH12g0114 | 554961 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0114 | 306 | SMART | tha2 | 26 | 246 | IPR001938 | - | |
| HCH12g0114 | 306 | Gene3D | Thaumatin | 24 | 246 | IPR037176 | - | |
| HCH12g0114 | 306 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 247 | IPR037176 | - | |
| HCH12g0114 | 306 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
| HCH12g0114 | 306 | PRINTS | Pathogenesis-related protein signature | 125 | 141 | IPR001938 | - | |
| HCH12g0114 | 306 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| HCH12g0114 | 306 | PRINTS | Pathogenesis-related protein signature | 236 | 245 | IPR001938 | - | |
| HCH12g0114 | 306 | PANTHER | OS03G0233200 PROTEIN | 12 | 246 | IPR001938 | GO:0005576(PANTHER)|GO:0006952(PANTHER) | |
| HCH12g0114 | 306 | ProSiteProfiles | Thaumatin family profile. | 23 | 246 | IPR001938 | - | |
| HCH12g0114 | 306 | PIRSF | PR5 | 2 | 284 | IPR001938 | - | |
| HCH12g0114 | 306 | ProSitePatterns | Thaumatin family signature. | 86 | 102 | IPR017949 | - | |
| HCH12g0114 | 306 | CDD | TLP-PA | 25 | 245 | - | - | |
| HCH12g0114 | 306 | Pfam | Thaumatin family | 30 | 246 | IPR001938 | - | |
| HCH12g0114 | 306 | FunFam | THAUMATIN-LIKE PROTEIN 1 | 24 | 246 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0114 | HCH-Chr12:608954 | HCH13g1350 | HCH-Chr13:41446347 | 5.90E-95 | dispersed | |
| HCH11g1372 | HCH-Chr11:45448801 | HCH12g0114 | HCH-Chr12:608954 | 1.00E-75 | transposed | |
| HCH4g1176 | HCH-Chr4:7892609 | HCH12g0114 | HCH-Chr12:608954 | 8.10E-68 | transposed | |
| HCH9g0193 | HCH-Chr9:1142007 | HCH12g0114 | HCH-Chr12:608954 | 2.90E-58 | transposed | |
| HCH9g0937 | HCH-Chr9:6925177 | HCH12g0114 | HCH-Chr12:608954 | 3.30E-60 | transposed | |
| HCH12g0114 | HCH-Chr12:608954 | HCH13g1349 | HCH-Chr13:41428794 | 3.70E-73 | wgd | |
| HCH12g0114 | HCH-Chr12:608954 | HCH14g0652 | HCH-Chr14:35186654 | 2.80E-92 | wgd | |
| HCH12g0114 | HCH-Chr12:608954 | HCH2g0536 | HCH-Chr2:49169399 | 3.60E-100 | wgd | |
| HCH12g0114 | HCH-Chr12:608954 | HCH4g0796 | HCH-Chr4:5143232 | 1.10E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0114 | - | - | - | 0.0 |