Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0129 ATGGCTCTTCTTACTTTCTTACCAGAAGCTAATGAGACGGAGCAGAAGAAAAACAAAACAAAACGGAGAAAAAAGATAAAAAAGCCAACATCTTCATCTTCATGGGACCAAATCAAGAACCTTCTTACCTGCAAACAAATGGAAGTACACGATCCATCAAAACCCTCCGCCGCTTATTCAAAACTGGGATCATCTTGCAGTTCCTTATGTAACTTTGGAGATGTTGTTCATGGCAATGCTAAGGTTGTCCATAGAGCTGATAACTCACCTGAAAGCAGCTCAGTCGGCCAGGAAGTTAGGTTACTTACTCGGAAACCTACAAATGGATCTTCTCGTCCGCCACCGACATCGTCGAGAACTAAAACCGGCGTCGGTGCCTCCGCGACTTCCTCTTCCTCCTCAAGAGGAATCCAATTGAGAAAGCTTTCTGGGTGTTATGAATGCCATACCATCATTGACCCTAGCAGGTACCCAATTCCAAGAAGTTCTATCTGTCCTTGTCCTCTGTGCGGAGAGGTCTTCCCCAAGATTGAAAGCTTAGAGCTTCATCAAGCAATTCGCCATGCTGTATCGGAGTTAGGTCCTGAAGATTCGGGTCGAAATATTGTGGAGATAATTTTCAAATCAAGCTGGTTAAAAAAAGACAACCCCATTTGTAAGATCGAACGGATATTAAAAGTCCACAACACCCAACGCACGATCCAACGGTTCGAGGATTGTCGTGATGCAGTCAAGACACGTGCACTTGCCAGTACCAGAAAAAACCCTCGGTGTGCGGCTGACGGCAATGAGCTGTTGCGGTTCCACTGTAACACCTTATCGTGCTCCCTCGGCTCAAGTGGCTCATCCAGCTTGTGCGGCTCCATTCCCGGCTGCGGAGTGTGCACCATCATCCGGAACGGTTTTCAAGGCAAGGAAGGAGGTGTACGGACGACGGCCAGTAGTGGTAGGGCCCACGACTCGTTCGAATGTGCGGACGGCGGAGGTCGTCGAGCCATGTTGGTGTGTCGTGTCATCGCGGGAAGGGTGAAGCGTATAGTAGATGATACGGCTGCGGAGGAGGAGAACATATCCGCGGGTGGTTCTTCCTACGACGCGGTATCACGGCAATCTGGGATGTACTCGAATTTGGAGGAGTTGGTTATTTTTAATCCAAAGGCTATTCTTCCTTGTTTTGTGGTTATTTATGAGGCGTTGGAAACTTAA 1206 48.09 MALLTFLPEANETEQKKNKTKRRKKIKKPTSSSSWDQIKNLLTCKQMEVHDPSKPSAAYSKLGSSCSSLCNFGDVVHGNAKVVHRADNSPESSSVGQEVRLLTRKPTNGSSRPPPTSSRTKTGVGASATSSSSSRGIQLRKLSGCYECHTIIDPSRYPIPRSSICPCPLCGEVFPKIESLELHQAIRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEDCRDAVKTRALASTRKNPRCAADGNELLRFHCNTLSCSLGSSGSSSLCGSIPGCGVCTIIRNGFQGKEGGVRTTASSGRAHDSFECADGGGRRAMLVCRVIAGRVKRIVDDTAAEEENISAGGSSYDAVSRQSGMYSNLEELVIFNPKAILPCFVVIYEALET 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 684508 686339 - evm.model.ptg000002l.1530 HCH12g0129 554976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0129 401 MobiDBLite consensus disorder prediction 84 135 - -
HCH12g0129 401 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 33 396 - -
HCH12g0129 401 FunFam C2H2-like zinc finger protein 189 397 - -
HCH12g0129 401 SUPERFAMILY ADP-ribosylation 190 397 - -
HCH12g0129 401 MobiDBLite consensus disorder prediction 1 39 - -
HCH12g0129 401 MobiDBLite consensus disorder prediction 86 135 - -
HCH12g0129 401 ProSitePatterns Zinc finger C2H2 type domain signature. 165 188 IPR013087 -
HCH12g0129 401 Gene3D - 189 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0129 HCH-Chr12:684508 HCH13g0103 HCH-Chr13:666767 6.00E-87 dispersed
HCH12g0129 HCH-Chr12:684508 HCH6g0724 HCH-Chr6:40770916 7.10E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32644 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0129 - - - 0.0