Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0140 ATGGGCTCTGTGGAAGAGAAGCTCAAGACAGGAGTTATGGTTAATAATGGGGTAGCTCCTCAGACTAATAATCTTCTTGAGGAAATGAAGTTGTTGAAAGAAATGCAGGATCAGACTGGGGCTAGGAAGGCTATTAACTCCGAGTTATGGCATGCGTGTGCTGGTCCTCTTGTTTCTTTGCCTCATGTGGGGAGTCTTGTTTATTACTTTCCTCAAGGCCATAGTGAGCAGGTGGCAGTTTCTACGAAGAGAACAGCAACCTCACAAATTCCTAATTATCCAAGTCTTCCCTCTCAGCTGATGTGCCAAGTTCAAAATGTTACCTTGCATGCCGATAAAGATTCAGATGAAATCTATGCGCAAATGAGTCTTCAACCCGTGAACTCTGAAAAAGATGTTTTCCTCGTACCAGACTTTGGACTAAGGCCAAGTAAGCATCCAAATGAGTTTTTCTGCAAAACTTTGACTGCAAGTGATACCAGCACACATGGAGGGTTCTCGGTGCCACGCAGGGCGGCTGAAAAGCTCTTTCCTCCCTTGGACTACACAATGCAACCACCAACTCAAGAACTTATTGTTCGAGACTTGCACGACAATACCTGGACTTTTCGCCACATATATCGTGGTCAACCGAAACGACACCTTCTCACAACTGGATGGAGTCTGTTCGTTGGAGCAAAAAGGCTTAGAGCAGGTGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTACTCATTGGAGTTCGGCGTTTGAATCGACAACAAACAACATTGCCATCATCCGTTCTATCTGCCGATAGTATGCATATAGGTGTTCTTGCTGCTGCAGCTCACGCTGCTGCTAATCGGAGTCCATTCACAATATTCTATAATCCGAGGGCATGTCCTTCAGAGTTTGTTATTCCTTTAGCAAAGTATCGAAAATGTGTATATGGAACTCAACTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAATCTGGTAAACGCAGATATATGGGAACAATTGTTGGAATTAGTGATTTAGATCCATTGAGATGGCCAGGTTCGAAGTGGCGAAATCTTCAGGTGGAGTGGGATGAGCCAGGGTGCTGTGATAAACAGAACAGGGTTAGCTCATGGGAGATTGAAACTCCTGAAAGTCTTTTCATTTTTCCTTCTTTGACTTCAGGTCTGAAACGTCCATTACACACTGGATTCTTGGGAGAAACTGATTGGGGGAGTTTGGTGAAGAGACCAATGCTACGAGTTCCTGATAATGGATGCGGAGATCTTTCGTACTCTGCGCCGTCTTTATGCTCAGAGCCGTTGATGAAGATGCTTATGAGACCTCAACTGGCTAACCTTCATGGAGCTACCATGCAGCAGGATTCAGTTACTAAGGTTGTTAAGTCACAGGACGTGAAAGCCATGCAGCCGGCAATGAATCAAAAGATGCAGCAGCTTATTCCATCAGAAAGTCTATCCTCTCAAATGCAGAATAACAACCATACTGCCACACAATCTGGTGAGATGAACACGAATTCATCGGTGAAAGCAAATCTACCTGGAAAAGTACATGCATCGGCAGCCCTTGTAAGTGAAACTCCAATGGGATCTGATGTTGACAAGGTGAAGCTTGAACATGATCTTTCAATCAATCAGTCTAATCAGTTGACCTCCGTTGGGGATTGCGGGGAGGATAAACTCGCCAGCAGCGATGCAAATGTAAATATGCAGACGCTTGTAAACCAGCTCTCATTTGTAAATCAGAATCAGGTTCCAATGCAGTTGCCATCAATGTCATGGCCCATGCAGGCTCAGCTCGAATCACTAATCCAACATCCACAACCAATAGACATACCTCAACCTGAATTTATGAATTTTAATGGTTTAATTTCATCTCTAGATGGTGACGGTTGTTTAATCAACTCTTCCTGTCTACCCCTTTCTGGAGTTATTAGATCACCTGGGAATCTCTCAATGTTGGGATTGCAAGACTCCTTAACAGTGTTTCCTGAAGCTTTTAACTTCCCCCTATCCTCTACAAACCAGGACATGTGGGATCCTCTTAATAATATGAGGATCTCATCTCAAACCAACCCTCTTGCTGCATTCTCTCACCCAGACCCATCTAACCTGAATTGTATGGCTAATGCAAATGTTATGAGAGATGTTTCAGATGAGAGCAACAATCAAAGTGGGATATACAATTGTTCTAACCTTGAAATCAGTAATGGTGGAAGTACTATGGTTGATCCTGCGGTTTCGAGCACCATTCTTGATGATTATTGCACTTTAAAAGATGCCGACTTTCCCAACCCTTCAGATTGCTTGGCGGGGAACTTCAGTTCAAGCCAGGATGTTCAGTCTCAGATTACCTCTGCTAGTCTTGGAGATTCTCAGGCTTTCTCTAGGCAAGAATTCCATGACAATTCAGGTGGTACATCCTCATGCAACGTGGATTTTGATGAGGGCAGCCTCCTGCAGAATAGCTCATGGAAGCAGGTGGTTCCGCCCTTGAGAACTTACACAAAGGTTCAGAAGGCAGGATCAGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTACGATGAACTTTGTTCAGCGATCGAATGTATGTTTGGACTTGAAGGATTGCTTAATGACCCAAGAGGCTCGGGATGGAAACTGGTGTATGTGGATTATGAGAAGGATGTCCTACTCATTGGTGATGATCCGTGGGAGGAATTCGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCGGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAACTCCTCAACAGTGCTATGATGCAAGGTATTAATTGCTCCTTATCAGAAGGTGGCCGATCTTAG 2862 43.92 MGSVEEKLKTGVMVNNGVAPQTNNLLEEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPSLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRLNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHTGFLGETDWGSLVKRPMLRVPDNGCGDLSYSAPSLCSEPLMKMLMRPQLANLHGATMQQDSVTKVVKSQDVKAMQPAMNQKMQQLIPSESLSSQMQNNNHTATQSGEMNTNSSVKANLPGKVHASAALVSETPMGSDVDKVKLEHDLSINQSNQLTSVGDCGEDKLASSDANVNMQTLVNQLSFVNQNQVPMQLPSMSWPMQAQLESLIQHPQPIDIPQPEFMNFNGLISSLDGDGCLINSSCLPLSGVIRSPGNLSMLGLQDSLTVFPEAFNFPLSSTNQDMWDPLNNMRISSQTNPLAAFSHPDPSNLNCMANANVMRDVSDESNNQSGIYNCSNLEISNGGSTMVDPAVSSTILDDYCTLKDADFPNPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNSSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYEKDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSLSEGGRS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 763691 768324 + evm.model.ptg000002l.1519 HCH12g0140 554987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0140 953 FunFam Auxin response factor 315 387 - -
HCH12g0140 953 Pfam AUX/IAA family 839 927 IPR033389 -
HCH12g0140 953 Gene3D - 149 252 IPR015300 -
HCH12g0140 953 CDD B3_DNA 150 251 IPR003340 GO:0003677(InterPro)
HCH12g0140 953 SMART B3_2 151 253 IPR003340 GO:0003677(InterPro)
HCH12g0140 953 ProSiteProfiles PB1 domain profile. 839 923 IPR053793 -
HCH12g0140 953 Gene3D - 836 928 - -
HCH12g0140 953 MobiDBLite consensus disorder prediction 492 517 - -
HCH12g0140 953 SUPERFAMILY DNA-binding pseudobarrel domain 138 280 IPR015300 -
HCH12g0140 953 SUPERFAMILY CAD & PB1 domains 835 918 - -
HCH12g0140 953 Gene3D - 315 387 - -
HCH12g0140 953 Pfam Auxin response factor 277 360 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH12g0140 953 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 931 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH12g0140 953 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677(InterPro)
HCH12g0140 953 FunFam Auxin response factor 149 253 - -
HCH12g0140 953 FunFam Auxin response factor 835 928 - -
HCH12g0140 953 Pfam B3 DNA binding domain 151 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0140 HCH-Chr12:763691 HCH14g1100 HCH-Chr14:37927991 1.70E-169 dispersed
HCH12g0140 HCH-Chr12:763691 HCH3g0834 HCH-Chr3:6324251 2.40E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32645 PF02309 AUX_IAA 1.50E-09 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0140 K14486 - csv:101216825 1660.2