Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0158 ATGGCAAGAGGAAAGATCCAGATCAGAAGGATAGAAAACCCTACAAACAGGCAGGTTACTTACTCCAAAAGACGTAATGGTTTATTCAAAAAAGCCAATGAACTCACCGTCCTCTGCGATGCTAGAGTCTCCATTATCATGTTTTCAAGTACTGGAAAACTCCATGAATTCATCAGCCCCGCCACTTCGACGAAGGAGTTATTCGATCAGTATCAGAAGACTTTAGGAGTGGATCTGTGGATCTCTCACTACGAGAGAATGCAAGAGAATCTGAAGAAGCTGAAAGATATAAACAGGAATCTTCAAAGGCAGATTAGGCAAAGGATGGGAGGGTGTATGAATGATTTGGGGTTTGAGGAACTGCGTTGTCTTGAAGAAGACATGGATAATGCTGTTCGAATCATCCGTGAACGCAAGTATCGTGTGATATCAAATCAGATCGAAACGCACAAGAAAAAGTTAAAGAGTGTAGGAGAAATACACAAGAGTCTTCTACAAGAGTTTGATATTGCAACAGAGGAAGAACCACATTATGGGATGGTAGAGAATGGAGGAGGAGGAGGAGATTATGATTCAATGATGGGGTTCTCAAATGGATGTCCACGATTGTTTTCCCTGCGCCTGCAAGCCAACCAGCCTAATATTCATCAGGGACCACCGTCAGATCTCACAACATATCCTTTGATGGAGTAA 693 42.42 MARGKIQIRRIENPTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSSTGKLHEFISPATSTKELFDQYQKTLGVDLWISHYERMQENLKKLKDINRNLQRQIRQRMGGCMNDLGFEELRCLEEDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEEPHYGMVENGGGGGDYDSMMGFSNGCPRLFSLRLQANQPNIHQGPPSDLTTYPLME 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 834271 836862 - evm.model.ptg000002l.1501 HCH12g0158 555005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0158 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 Coils Coil 84 107 - -
HCH12g0158 230 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g0158 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH12g0158 230 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g0158 230 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g0158 230 Pfam K-box region 82 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g0158 230 FunFam MADS-box transcription factor 16 13 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0158 HCH-Chr12:834271 HCH12g0841 HCH-Chr12:5505297 2.00E-34 dispersed
HCH14g0097 HCH-Chr14:18756755 HCH12g0158 HCH-Chr12:834271 1.20E-15 transposed
HCH12g0158 HCH-Chr12:834271 HCH13g1377 HCH-Chr13:41684183 7.20E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32647 PF01486 K-box 3.50E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0158 K09264 - csv:101218008 384.415