Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0160 ATGGCTGACACTGGCTCAGATTCAAGGAGCAGAATGTGGTGTTCTATTCCTGAGAAGGCTCAACTTCATGGGGCCATGTTGGCTTTGCAATTTGGCTATGCTGGATTTCATGTTGTGTCAAGAGCTGCCCTTAATATGGGCATCAGTAAGCTCGTTTTCCCAGTTTATAGGAACATCATTGCCTTGCTTCTTCTTCTTCCCTTTGCATATTTTCTGGAAAAGAAAGAGAGACCTGCTCTCACTCTCAATTTTGTGCTTCAATTCTTCTTCCTAGCACTCGTTGGAATCACAGCAAACCAAGGGTTCTACTTGCTAGGTTTGGACAACACCTCGCCGACGTTCGCCTCGGCGATACAAAACTCGGTACCGGCCATCACTTTCCTAATGGCTGCGTTGCTCCGAATTGAACAAGTGAGACTAAACAGAAAAGATGGGATAGCAAAAGTGTTGGGAACTATTTGTTGTGTAGGTGGGGCCACAGTGATCACTCTATACAAAGGGCCAACAATATACAGCCCATCTCCTTCACTACAAACGACAGCACCCATGTTTGCTTCTCTCGGTGATGCAAACGGCAAGAACTGGACCCTTGGTTGTGTCTACCTCGTTGGTCATTGCTTGTCTTGGTCTGGTTGGCTTGTTTTGCAGGCTCCCGTTTTGAAAAAGTACCCGGCTCGCCTTTCCGTCACTTCCTTCACTTGTTTCTTTGGGATTATTCAGTTCGTTATTATAGCTCTTGTTGTTGAGAGAGATTCTCACGCTTGGCTTTTCCATTCTGGTGGAGAAATCTTCAGCGTTTTGTATGCGGGAGTTGTTGCATCTGGGATTGCTTTCGCTGTACAGATATGGTGTATTGATAGAGGTGGCCCTGTCTTTGTAGCTGTTTATCAACCTGTTCAGACACTCGTGGTCGCTATCATGGCTTCTTTCGCTCTCGGTGAAGAGTTCTACTTAGGAGGGATTATAGGCGCGGTGCTGATCATAACGGGATTGTACTTTGTCCTATGGGGCAAAAGCGCTGAAAGGAAATTTGCACTTGAGAAGGCAGCAATCGTCTCCACAGCGGAGCACGGTAACAACAGAACAACCACACACATCAAGACGTCCATTACTCAACCCCTCCTCCATCCATCGACTGAGAATGTTTGA 1149 46.56 MADTGSDSRSRMWCSIPEKAQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPALTLNFVLQFFFLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVLGTICCVGGATVITLYKGPTIYSPSPSLQTTAPMFASLGDANGKNWTLGCVYLVGHCLSWSGWLVLQAPVLKKYPARLSVTSFTCFFGIIQFVIIALVVERDSHAWLFHSGGEIFSVLYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIITGLYFVLWGKSAERKFALEKAAIVSTAEHGNNRTTTHIKTSITQPLLHPSTENV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 855011 857214 + evm.model.ptg000002l.1499 HCH12g0160 555007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0160 382 Pfam EamA-like transporter family 28 163 IPR000620 GO:0016020(InterPro)
HCH12g0160 382 Pfam EamA-like transporter family 197 335 IPR000620 GO:0016020(InterPro)
HCH12g0160 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 339 - -
HCH12g0160 382 PANTHER WAT1-RELATED PROTEIN 25 348 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH12g0160 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0160 HCH-Chr12:855011 HCH9g0974 HCH-Chr9:7272502 7.00E-69 dispersed
HCH12g0843 HCH-Chr12:5513195 HCH12g0160 HCH-Chr12:855011 9.50E-61 transposed
HCH8g1139 HCH-Chr8:47039148 HCH12g0160 HCH-Chr12:855011 2.80E-112 transposed
HCH12g0160 HCH-Chr12:855011 HCH4g0763 HCH-Chr4:4901402 1.20E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0160 - - - 0.0