Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0183 ATGCCTTTCAGAGGAATAATTCGAGAAATACGAGAAGGGATTGGGAATTCAACGAGGAAAGGGAAGGAGGGAGTGCAAATGCGTCATTTGGGAAAATCCCATATTGCCCCTGAGCACGAACAGCCTTCTTCTTCTTCTTCTTCTTCTTCGACGACGGCGATGACTTCCAATGCGGTATCGTTGGAATATAGCTGTTGGGCAAATTTACCAGGGGAGTTGCTTTTGGATATAATAAAAAGGGTGGAAGCGAGTGAAACTTGTTGGCCTTCGCGTCGTGATGTTGTTTCTTGTGCTTCAGTTTGTAAGTCTTGGAGGGTTGTTACTAAGGAAGTTGTTCGAACTCCTGAGCAGTGTGGTTCCATTACCTTTCCTATTTCTCTCAAGCAGCCGGGACCAAGAGATACTCCAATCCAGTGCTTCATTAAAAGGGAAAGAGCAACTTCAACGTTTCGACTTTATCTCGGCCTAAGTCCTGCTCTGTCTGGTAACCTAAGTAAACTGTTGCTAACTGCAAGAAGAATCCGACGAGCGACAAGTACAGATTTCATTGTATCCTTAGTTTCAGACGATTTCTCTCGAGCAAGCAACACTTACATTGGAAAGCTAAGGTCAAATTTTCTGGGTACCAAGTTTTCAATTTATGATAGTCAACCTCCACATGAACCGACTTTGCGAACTTGTAGATCAAAACGAAGAATCCATTTGAAACAGGTATCTCCAAGTAAAGGTGCAACGAACTGTAAAGTCGCTGCTGTATCGTATGAGCTCAATGTCCTCCGCACTAGAGGTCCTAGAAGAATGAGGTGCACCATGAATTCGATCCCTGTTACATCTATCGAAGAGGGTGGCTCTGCCCCTACTCCAATGGAGTTTAAAGACTCGAGTAATGAGGAACATTCCCCATCATCAGTTTCGAAAGGAAAGCAGCTGCTAATCGAGCCTCCAGAGCCTTTAGAATCTGATCAGGGGCCGGGGCCAATAGCTCCTTTAGTCTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTACAATGTTGGTGCCTAAATTTCAAAGGCCGTGTGACAGTGGCCTCTGTGAAGAATTTCCAGCTGGTTGCTGCTGTGGAGACTAGCCAAAATGTTTCTGCTGCTGAACAAGAAAAAGTGATTTTGCAGTTTGGTAAAATTGGGAAAGACATTTTTACCATGGATTATCGCTATCCGCTCTCCGCTTTTCAAGCCTTTGCAATTTGCCTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1269 44.29 MPFRGIIREIREGIGNSTRKGKEGVQMRHLGKSHIAPEHEQPSSSSSSSSTTAMTSNAVSLEYSCWANLPGELLLDIIKRVEASETCWPSRRDVVSCASVCKSWRVVTKEVVRTPEQCGSITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTARRIRRATSTDFIVSLVSDDFSRASNTYIGKLRSNFLGTKFSIYDSQPPHEPTLRTCRSKRRIHLKQVSPSKGATNCKVAAVSYELNVLRTRGPRRMRCTMNSIPVTSIEEGGSAPTPMEFKDSSNEEHSPSSVSKGKQLLIEPPEPLESDQGPGPIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 996414 998286 + evm.model.ptg000002l.1476 HCH12g0183 555030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0183 422 Pfam F-box-like 66 108 IPR001810 GO:0005515(InterPro)
HCH12g0183 422 MobiDBLite consensus disorder prediction 33 53 - -
HCH12g0183 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
HCH12g0183 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
HCH12g0183 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
HCH12g0183 422 PRINTS Tubby superfamily signature 182 198 IPR000007 -
HCH12g0183 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
HCH12g0183 422 PRINTS Tubby superfamily signature 246 273 IPR000007 -
HCH12g0183 422 PRINTS Tubby superfamily signature 198 222 IPR000007 -
HCH12g0183 422 Gene3D - 61 115 - -
HCH12g0183 422 MobiDBLite consensus disorder prediction 38 53 - -
HCH12g0183 422 Pfam Tub family 127 417 IPR000007 -
HCH12g0183 422 CDD F-box_AtTLP-like 66 110 - -
HCH12g0183 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
HCH12g0183 422 SUPERFAMILY F-box domain 62 109 IPR036047 GO:0005515(InterPro)
HCH12g0183 422 SUPERFAMILY Tubby C-terminal domain-like 115 422 IPR025659 -
HCH12g0183 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
HCH12g0183 422 Gene3D Tubby Protein; Chain A 124 422 IPR025659 -
HCH12g0183 422 MobiDBLite consensus disorder prediction 277 308 - -
HCH12g0183 422 PANTHER TUBBY-RELATED 49 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0183 HCH-Chr12:996414 HCH7g1132 HCH-Chr7:44085791 2.10E-114 dispersed
HCH12g0183 HCH-Chr12:996414 HCH13g0234 HCH-Chr13:1539533 5.30E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32651 PF01167 Tub 1.40E-104 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0183 K19600 - csv:101222500 644.039