Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0214 ATGTATCTCCTTTCCGTTACACTCATAATTTCCGTTCCTCTTTCCATCCTCCTGAAATTTCTATACTCAATTATATGGGTCCCATGGAGGATTCAAATCCACTTCCAAAAGCAAGGTGTAACAGGCCCTCGCTATCGTCCGATGGTCGGAAACTCGGCCGAGATCCGCCGTCTATTCGCCGAAGCTCAATCGAAGCCAATCCCCTTCCACCACGACATACTTTGTCGGGCTGCTCCGTTTTATTTCCGGTGTTCTGGAATTTACGGGAAAACGTTTCTGTACTGGTTCGGGGCAAAACCGAGACTGGCTATATCCGACCCGGATGTGATAAAGGAGGTGTTAATGAGTACGGGTGGGTATTTTCGGAAGGTCGGGTTTAACCCGTTGTCAAAGATGCTTTTTGGACAGGGACTTGTTGGGCTGGATGGAGAAAAATGGGTCACGCATAGGAGGATCGCAAACCAGGCCTTTAGCATGGACCGTGTGAAGGGTTGGCTACCTGAAATTACTGTCAGTGCCTCAAATATGTTGAGGAGATGGGATGAGATCAAAGGAGGAATGGAGGAATTGGAATTGGACGTGCACAAAGAGTTCCGCGACCTCTCGGCGGACATAATATCAAGAACGGCATTTGGAAGTAATTTCGAAGAAGGCAAACGGATCTTCAATTTACAAGAACAGCAAATGCATCTCTTCTCTCAGGCAATCAGAAGTGTTTACATTCCTGGGTTCAGATTTTTGCCAACCAAAAAGAATAGAGAAAGATGGAGTCTAGAGAAAGAGACTCGAGATTCCATCAAAGTGCTGATTGAGAAAAACAGCAGAGGGAGGGAAAATTCAACCAATCTGCTTAGCCTCTTCATGTCATCTTATAAGAAGCAGAATGGAGAAGAAGAGAAACTTGGAACAACTGCTCATCTTCTAACATGGGCACTTCTCCTTTTGGCAAAGCATCAGGAATGGCAAGACAAAGCCCGTGAAGAAGTCGTTCGCGTCTGTGGGCGCAAAACGCCACCTGCAGCAGAGAGTTTGAGTGAACTTAAACTTGTGAGTATGATAATTAACGAAACGCTTCGGCTTTATCCTCCAGCAGTGATGTTGATGAGGCAGACGGCAAAACGACTGACGCTCGGAAGCTTAGACGTTCCAGCAGGCACACAGCTCTACTTGGCATTGACGGCGGTTCATCACGACACTGATATTTGGGGAGAAGATGCAAACAGTTTCAACCCTTTGAGATTCGGCGAAGCTCGAAAGCATCTGGCTTCGTTTCTACTGTTTTCATTGGGACCCCGAAACTGCGTAGGCCAAACCTTGGCGTTGGTCGAGGCCAAAGTAGTTCTGGCCATGATAATTCAACAGTTTTCTGTTGCTGTTTCTCCAACCTACACTCACTCTCCTATGCTGTTTGTAAGCTTGCAGCCTCAGTTTGGTGCTCAAATCCTCATTAGGAGTCTATGGAACTGA 1467 46.63 MYLLSVTLIISVPLSILLKFLYSIIWVPWRIQIHFQKQGVTGPRYRPMVGNSAEIRRLFAEAQSKPIPFHHDILCRAAPFYFRCSGIYGKTFLYWFGAKPRLAISDPDVIKEVLMSTGGYFRKVGFNPLSKMLFGQGLVGLDGEKWVTHRRIANQAFSMDRVKGWLPEITVSASNMLRRWDEIKGGMEELELDVHKEFRDLSADIISRTAFGSNFEEGKRIFNLQEQQMHLFSQAIRSVYIPGFRFLPTKKNRERWSLEKETRDSIKVLIEKNSRGRENSTNLLSLFMSSYKKQNGEEEKLGTTAHLLTWALLLLAKHQEWQDKAREEVVRVCGRKTPPAAESLSELKLVSMIINETLRLYPPAVMLMRQTAKRLTLGSLDVPAGTQLYLALTAVHHDTDIWGEDANSFNPLRFGEARKHLASFLLFSLGPRNCVGQTLALVEAKVVLAMIIQQFSVAVSPTYTHSPMLFVSLQPQFGAQILIRSLWN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1197034 1204545 + evm.model.ptg000002l.1445 HCH12g0214 555061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0214 488 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH12g0214 488 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 Gene3D Cytochrome P450 25 485 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 SUPERFAMILY Cytochrome P450 42 483 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0214 488 PANTHER CYTOCHROME P450 FAMILY MEMBER 16 478 IPR050665 GO:0004497(PANTHER)
HCH12g0214 488 Pfam Cytochrome P450 81 463 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0214 HCH-Chr12:1197034 HCH8g0803 HCH-Chr8:44636767 3.10E-106 dispersed
HCH12g0214 HCH-Chr12:1197034 HCH10g0437 HCH-Chr10:3478798 1.40E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0214 - - - 0.0