Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0248 ATGGCGATCTCTTCTTCTTCCCCTCGCGAGGAATTCGTCTACATGGCTAAACTCGCCGAACAAGCCGAACGCTACGAAGAAATGGTTGAATTCATGGAAAAAGTCTCCGCCGCTATCGATCACGAGGAACTCACCGTCGAAGAACGGAATCTCCTCTCCGTCGCTTACAAAAACGTTATCGGAGCACGTAGGGCTTCCTGGCGTATTATTTCCTCCATCGAGCAGAAGGAAGAGAGTCGTGGTAACGATGATCACGTTTCTGTGATCCGTGAATATAGATCTAAGATCGAGACGGAGCTTTCTAATATCTGCGATGGAATCCTTAAGCTTCTTGATTCTCGCCTCATTCCTTCCGCCGCTTCTGGAGATTCCAAGGTTTTTTATCTGAAAATGAAAGGCGATTATCATAGGTATTTGGCTGAGTTTAAAACTGGAGCTGAACGGAAGGAGGCTGCGGAAAGTACTCTTACTGCCTATAAAGCTGCTCAGGATATTGCGAATGCGGAACTTGCTCCAACTCATCCGATCCGACTAGGATTGGCTTTGAACTTCTCTGTGTTTTACTATGAGATTCTGAATTCCCCTGATCGAGCTTGCACCCTTGCTAAACAGGCTTTCGATGAAGCGATTGCTGAGTTGGATACATTGGGAGAGGAATCATACAAAGATAGTACTTTGATCATGCAACTTCTTCGTGACAACCTCACCTTATGGACTTCGGACATGCAGGATGATGGGGCAGATGAGATTAAAGAAGCAGCAGCTACCAAACGTGACGACGAACAGTAG 789 46.26 MAISSSSPREEFVYMAKLAEQAERYEEMVEFMEKVSAAIDHEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIREYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAATKRDDEQ 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1376281 1377735 - evm.model.ptg000002l.1411 HCH12g0248 555095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0248 262 ProSitePatterns 14-3-3 proteins signature 1. 49 59 IPR023409 -
HCH12g0248 262 Pfam 14-3-3 protein 15 239 IPR023410 -
HCH12g0248 262 Coils Coil 15 35 - -
HCH12g0248 262 PIRSF 14-3-3 3 251 IPR000308 -
HCH12g0248 262 Gene3D - 1 252 IPR036815 -
HCH12g0248 262 ProSitePatterns 14-3-3 proteins signature 2. 221 240 IPR023409 -
HCH12g0248 262 PANTHER 14-3-3 PROTEIN 9 244 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH12g0248 262 FunFam 14-3-3 protein epsilon 5 252 - -
HCH12g0248 262 PRINTS 14-3-3 protein zeta signature 158 184 IPR000308 -
HCH12g0248 262 PRINTS 14-3-3 protein zeta signature 123 145 IPR000308 -
HCH12g0248 262 PRINTS 14-3-3 protein zeta signature 92 116 IPR000308 -
HCH12g0248 262 PRINTS 14-3-3 protein zeta signature 185 211 IPR000308 -
HCH12g0248 262 PRINTS 14-3-3 protein zeta signature 43 72 IPR000308 -
HCH12g0248 262 PRINTS 14-3-3 protein zeta signature 212 241 IPR000308 -
HCH12g0248 262 SMART 1433_4 9 252 IPR023410 -
HCH12g0248 262 SUPERFAMILY 14-3-3 protein 8 241 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0248 HCH-Chr12:1376281 HCH9g0347 HCH-Chr9:2161383 3.30E-118 dispersed
HCH12g0248 HCH-Chr12:1376281 HCH4g0229 HCH-Chr4:1363839 6.40E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0248 K06630 - csv:101220164 469.929