Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0259 ATGGCGAAGGAGAGAGAACTGCTTGTTTACTCTGCTAGGCTTGCTGAGCAAGCTGAGAGATATGATGAGATGGTTGAGGAAATGAAGAATGTTGCAAAGTTGAATGTGGAATTGACAGTGGAAGAGAGAAATCTACTGTCTGTCGGCTATAAGAATGTGATTGGGGCGAGACGAGCTTCATGGCGTATATTGTCTTCAATTGAACAGAAGGAGGAAGCCAGACATAATGAGAAGAACGTTGAACGGATTGTTGGGTACCGGAGTCGGGTTGAAGATGAACTTTCTAAAATTTGCAGTGACATTTTGGTAATTATTGACCAGCATCTCCTCCCATCTTCCTCAACTGGAGAATCTACTGTGTTCTATTATAAAATGAAAGGAGATTATTGTCGCTATTTGGCCGAGTTTAAATCTGGCAACGAGCGTAAACAAGCTGCAGATCAGTCATTAAAGGCTTATGAAGCTGCTTCTGGTATTGCTACCTCTGATCTACTTCCGACTCATCCTATAAGACTTGGCTTGGCTCTGAACTTCTCTGTTTTTTACTATGAGATTTTGAATTCCCCTGAGAGGGCTTGCCACCTTGCTAAGCAAGCCTTTGATGAGGCAATCTCTGAACTAGACAGTCTCAATGAAGATTCCTACAAGGACAGTACCCTGATTATGCAGCTTCTTAGGGATAATCTAACTCTGTGGACTTCTGATTTGCCAGATGAGGGCGGCGAGCAATCCAAGGCCGATGAACTTCAAGCAGAGAGTTAA 762 43.18 MAKERELLVYSARLAEQAERYDEMVEEMKNVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEARHNEKNVERIVGYRSRVEDELSKICSDILVIIDQHLLPSSSTGESTVFYYKMKGDYCRYLAEFKSGNERKQAADQSLKAYEAASGIATSDLLPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSKADELQAES 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1439879 1442546 + evm.model.ptg000002l.1400 HCH12g0259 555106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0259 253 PIRSF 14-3-3 1 248 IPR000308 -
HCH12g0259 253 Pfam 14-3-3 protein 12 233 IPR023410 -
HCH12g0259 253 Gene3D - 1 246 IPR036815 -
HCH12g0259 253 Coils Coil 11 34 - -
HCH12g0259 253 FunFam 14-3-3 protein epsilon 1 246 - -
HCH12g0259 253 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
HCH12g0259 253 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
HCH12g0259 253 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
HCH12g0259 253 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
HCH12g0259 253 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
HCH12g0259 253 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
HCH12g0259 253 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
HCH12g0259 253 PANTHER 14-3-3 PROTEIN 4 238 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH12g0259 253 SMART 1433_4 5 246 IPR023410 -
HCH12g0259 253 SUPERFAMILY 14-3-3 protein 4 235 IPR036815 -
HCH12g0259 253 ProSitePatterns 14-3-3 proteins signature 2. 215 234 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0259 HCH-Chr12:1439879 HCH1g0880 HCH-Chr1:57324888 1.40E-105 dispersed
HCH7g0108 HCH-Chr7:670533 HCH12g0259 HCH-Chr12:1439879 6.20E-109 transposed
HCH12g0259 HCH-Chr12:1439879 HCH4g0218 HCH-Chr4:1302109 6.80E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0259 K06630 - csv:101213169 431.795