Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0261 ATGGATAAGCTTTGCTGTTTTAATGCTTCTTATGCTCAGCTCTCCGCATCAAACTGTGGTAAAGGAAGAAACCATGCGGGGCTAATCAAGTATGGATTCTGCCTAGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTACTCAGATGCAGGAACATGAGTTGGGGCTCTTTGCTATTTATGACGGTCATTTAGGAGAAAGCGTGCCTGCCTACTTACAAAAGCATTTGTTTCCTAATATCCTGAAGGAGGACGAATTTTGGGTTGACCCCCACAGCTCCATCTCAAAAGCCTATGAGAAGACAGACCAGGCAATTCTATCTCACAGCTCTGACTTGGGCAGGGGCGGATCAACTGCTGTTACTGCTATTCTGATTAACGGTCAAAGATTATGGGTGGCCAATGTTGGAGATTCACGAGCAGTTATTTCGAGGGGGGGTGAAGCCGTACCGATGACCGTGGATCATGAGCCTAATACAGAACGGGGCATGATTGAGAATAAAGGCGGCTTTGTTTCAAACATGCCAGGAGATGTACCTCGAGTGAATGGGCAGTTAGCAGTTTCACGTGCTTTCGGAGACAAGAGTCTTAAATCTCATTTGCGATCAGATCCTGACATACGAGATATTAATATAGATGCCAACGTCGACATATTAATTCTCGCTAGTGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCAGTTGATATTGCAAGAAGAATTAAAGATCCATTCAAGGCAGCTAAGCAGTTAATAACTGAAGCGTTGAAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTGAGATTTAGGTGA 837 43.61 MDKLCCFNASYAQLSASNCGKGRNHAGLIKYGFCLVKGKANHPMEDYHVAKFTQMQEHELGLFAIYDGHLGESVPAYLQKHLFPNILKEDEFWVDPHSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVISRGGEAVPMTVDHEPNTERGMIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDANVDILILASDGLWKVMANQEAVDIARRIKDPFKAAKQLITEALKKESKDDISCIVVRFR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1447153 1449585 - evm.model.ptg000002l.1398 HCH12g0261 555108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0261 278 SUPERFAMILY PP2C-like 28 277 IPR036457 -
HCH12g0261 278 FunFam Probable protein phosphatase 2C 39 21 278 - -
HCH12g0261 278 Pfam Protein phosphatase 2C 39 270 IPR001932 -
HCH12g0261 278 PANTHER PROTEIN PHOSPHATASE 29 275 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH12g0261 278 CDD PP2Cc 29 277 IPR001932 -
HCH12g0261 278 SMART PP2C_4 22 275 IPR001932 -
HCH12g0261 278 SMART PP2C_SIG_2 41 277 IPR001932 -
HCH12g0261 278 Gene3D - 25 278 IPR036457 -
HCH12g0261 278 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0986 HCH-Chr11:41408307 HCH12g0261 HCH-Chr12:1447153 3.20E-119 dispersed
HCH12g0261 HCH-Chr12:1447153 HCH12g1058 HCH-Chr12:7936003 6.00E-86 dispersed
HCH12g0261 HCH-Chr12:1447153 HCH7g0133 HCH-Chr7:899353 2.30E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0261 K17506 - csv:101213414 511.916