Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0288 ATGTGGCTGCCAAGACATAGCCTTGAAAGAAAGGAAAGATTGAATGTGAATGGTTTGGTAGCAGTTGCCATTGATAAAGATAAAGGCAGCCAAGTTGCTCTCAAATGGGCTGTTGATCATTTGCTTCAAAGAGGCCAAACTGTCTTTCTCATTCATGTCAAACTCAAATTGCCTTCTCTTTCCCACTCCCATATGCATTCTCCAAAGATAAATTATAAAGCTGATCTTGAAGCCAGCATCAAGGAGTTGTTCCTACCTTTTCGTTGTTTTTGCACCCGAAAGGATATACAATGCACAGATGTTGTCCTAGAAGATGTAGATATAGCAAAGGCAATAATCGAGTATGCCACTCATTCGATGATAGAGAATCTTGTTGTCGGTGCTTCGACAAAAACTGGCTTCTTAAGATTCAAGGCAACAGACGTTCCCAGCAGTGTCGTAAAAGGAGCACCGGATTTTAGTAATGTTTTCGTCATATCTAAAGGGAAAATCCAATCAACGCATTCGGCTTCACGTCCTGCCCCAGTGGTAAATCATATACGAGCTCAATTACAAAAGCAGAACAGTACAAGATATGATTTACCTGACTTCCATACCCCCCATTCTGCAAATGCAAGAGTATCAATTGAAAAGCCGCCCATCGCAGTTGAGCTGCCATATAAATCACACGAAGAACACGAGTTCATGAGGTCTCCATTCACAAGGAAAGGATACAATTACAAACCATCTTATGGAGACTTATCTGCGCTAGATACCGATATATCTTTTGTCAGCACTGGAAGGAAAAGCATTGATACCCTATTTCCTTCATTTTATGAAAATCAAGATACAATAAAAGTTACTCCACATGCTTCAAACGGTACAGAACTTGACGTGGCTCACAGCTTCGAGTCTCTTCACCTGGGGCGGATGTCGATGGATATGACATCAGAGTTCTCTTCAGTCTCACAAGAGAGTGACAGAATGTCAACCTCATCTCAGACTATGGAAGATGTGGAGGCTGAGATGCGGAGGCTAAAGCTGGAACTCAAGCAAACCATGGAAATGTATAGTACAGCCTGTAAGGAAGCGTTTTCGGCAAAACAAAAGGCATTCGAGCTTCAACGGTGGAAATTAGAAGAAGAACGAAGATTAGAAGAGGCAACATTGGCTGGTGAAGCTGCAATGGCACTTGCAGAACAGGAGAAGGCCAAGTCTAAAGCAGCCATTGAGGCTGCTGAAGCAGCTAGAAGGATTGCAGAATTGGAATCACAGAAAAGAATGAAGGCAGAAATTAAAGCACTTAAAGAAGCTGAAGAGAAGCGAAAGGTATTCGATGCATTAGCACATTCCGATATCAGGTACAGAAAGTATTCAATTGAGGAGATTGAAGCAGCAACAGAGTTCTTCTCTGAATCTCGCAAGATTGGAGAAGGAGGGTATGGACCTGTATATAAGTGTTATCTTGATCATACTGCTGTTGCTGTTAAGGTTCTACGCCCCGATGCAACTCAAGGACGGTCGCAGTTCCAACAAGAGGTGGAAGTGCTCAGCTGTATCCGTCATCCAAACATGGTCCTCCTCCTTGGAGCCTGCCCTGAGTATGGCTGTTTGGTCTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGACTTCTCAGACGAGGAAACACACCGACTCTACCATGGCAACTCAGGTTTAAAATTGCTGCTGAAATTGGAACGAGTTTGTTGTTCCTGCACCAAGCCAAGCCAGAGCCTCTCGTACACCGTGACCTCAAACCGGCCAACATCCTGCTCGACCATAACTTTATCAGCAAGATTAGTGATGTTGGCTTGGCCAGACTTGTACCCCCGTCTGTGGCTGATACCGTAACGCAGTATCGAATGACATCGACCGCAGGCACGTTTTGCTACATTGACCCAGAGTATCAACAAACAGGCATGCTTGGTGTGAAGTCTGACATATACTCTTTAGGAATCTTGTTTCTACAACTGATAACTTCCAAGCCACCAATGGGATTGACTCACCATGTTGAAAGAGCCATAGAGAAGGGGACATTCTCTAACATTCTTGATCAAACTGTGCCTGATTGGCCTATTGAAGAGGCTTTGTCTTTTGCCAAGCTGGCCCTCAAGTGTGCCGAGTTAAGACGCAGAGACCGGCCTGATCTTAAAAAGGGCATCCTGCCAGAACTTAACAGATTGAGAGCTATTGCAGAAGATTCCCTGCCTCCAACATTGATGCTAGACACAAGCCCCTCTCGCAGCAGCAGCCAAGTTTCTCTACAGCTAGAGGCAATGAGTAGTACGTCATCCCAGCGATCCGGCGACAGCGCTTGA 2322 44.75 MWLPRHSLERKERLNVNGLVAVAIDKDKGSQVALKWAVDHLLQRGQTVFLIHVKLKLPSLSHSHMHSPKINYKADLEASIKELFLPFRCFCTRKDIQCTDVVLEDVDIAKAIIEYATHSMIENLVVGASTKTGFLRFKATDVPSSVVKGAPDFSNVFVISKGKIQSTHSASRPAPVVNHIRAQLQKQNSTRYDLPDFHTPHSANARVSIEKPPIAVELPYKSHEEHEFMRSPFTRKGYNYKPSYGDLSALDTDISFVSTGRKSIDTLFPSFYENQDTIKVTPHASNGTELDVAHSFESLHLGRMSMDMTSEFSSVSQESDRMSTSSQTMEDVEAEMRRLKLELKQTMEMYSTACKEAFSAKQKAFELQRWKLEEERRLEEATLAGEAAMALAEQEKAKSKAAIEAAEAARRIAELESQKRMKAEIKALKEAEEKRKVFDALAHSDIRYRKYSIEEIEAATEFFSESRKIGEGGYGPVYKCYLDHTAVAVKVLRPDATQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPTLPWQLRFKIAAEIGTSLLFLHQAKPEPLVHRDLKPANILLDHNFISKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGILFLQLITSKPPMGLTHHVERAIEKGTFSNILDQTVPDWPIEEALSFAKLALKCAELRRRDRPDLKKGILPELNRLRAIAEDSLPPTLMLDTSPSRSSSQVSLQLEAMSSTSSQRSGDSA 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1615446 1619381 + evm.model.ptg000002l.1371 HCH12g0288 555135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0288 773 Gene3D HUPs 19 159 IPR014729 -
HCH12g0288 773 SMART serkin_6 463 726 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0288 773 CDD STK_N 19 162 - -
HCH12g0288 773 Pfam Protein kinase domain 464 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0288 773 PANTHER OS02G0152300 PROTEIN 20 761 IPR051348 -
HCH12g0288 773 FunFam U-box domain-containing protein 51 536 736 - -
HCH12g0288 773 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 151 - -
HCH12g0288 773 Coils Coil 322 349 - -
HCH12g0288 773 Pfam Universal stress protein family 20 151 IPR006016 -
HCH12g0288 773 ProSiteProfiles Protein kinase domain profile. 463 726 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0288 773 Gene3D Phosphorylase Kinase; domain 1 442 535 - -
HCH12g0288 773 MobiDBLite consensus disorder prediction 741 773 - -
HCH12g0288 773 SUPERFAMILY Protein kinase-like (PK-like) 446 719 IPR011009 -
HCH12g0288 773 MobiDBLite consensus disorder prediction 740 773 - -
HCH12g0288 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0288 773 Gene3D Transferase(Phosphotransferase) domain 1 536 737 - -
HCH12g0288 773 Coils Coil 389 435 - -
HCH12g0288 773 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 435 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0548 HCH-Chr10:4428183 HCH12g0288 HCH-Chr12:1615446 1.60E-114 dispersed
HCH12g0288 HCH-Chr12:1615446 HCH4g0521 HCH-Chr4:3418413 3.20E-198 dispersed
HCH10g0198 HCH-Chr10:1618982 HCH12g0288 HCH-Chr12:1615446 3.60E-222 transposed
HCH7g0502 HCH-Chr7:3775906 HCH12g0288 HCH-Chr12:1615446 3.40E-219 transposed
HCH12g0288 HCH-Chr12:1615446 HCH4g0366 HCH-Chr4:2415927 4.80E-258 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81101 PF00069 Pkinase 1.80E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0288 - - - 0.0