Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0291 ATGGCTCCAAGATTGGGCTTTTCATGGTGGTGGGGAGAAAATACTCAAAGGGGAACACCAGTGGTTGTCACTATGGAAAAACCAAACTTCTCCGTCGTGGAGATTGACGGCGCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGGGGAAAGAATGCCAAACAAGTTACTTGGGTTCTTCTTCTTAAGGCCAATAGAGCTGTCGGTTGCATAACTTGGCTTGCTACTGTCCTTTGGACATTGCTAGGAACCATCAAGAAGAGGCTAATCTATAGGCAGGGAGTAGATATTGAGAATGAGAAATTGGGTAAAGGGAAGTTATTGTTTGGAGTAATTAGAGTTTTTTTAGTAACTTCCTTGGCAATTCTGGCTTTTGAAATTCTTGCTTATTTCAAAGGCTGGCATTATTTTCAAAATCCAAATCTTCACCTTCCTCAGGCTTCTGATTTACAAGGATTGCTTCATACACTTTATGTTACATGGTTAACTTTCCGGGCTGATTACATTGCTCCTCTTATTCAAACACTATCTAAATTTTGCATTGTTCTGTTTCTTATCCAATCGTTGGATCGTATGGTGCTATCCTTTGGTTGCCTATGGATAAAGTACAAGAGAATTGAACCCAAGATAGAGGGAGATCCCTTCAAGTTGAATGATGTAGAGGGAGCCGGGTGCAAGTATCCGATGGTTCTCGTTCAGATACCGATGTGCAACGAGCGGGAGGTTTATGAGCAATCTATTTCTGCAGTCTGTCAGATCGATTGGCCGAAGGACAATTTACTAATTCAAGTTCTTGATGATTCTAGTGATGAGAGCATCCAAATGTTAATCAAGGCAGAGGTTGCAAAATGGAGCCAGAAAGGGGTCAACATAATCTATCGCCATCGATTACTAAGAACTGGTTACAAAGCTGGGAACCTCAAGTCTGCAATGAGTTGTGATTATGTCCAAGGTTATGAGTTTGTAGCAATTTTCGATGCCGACTTTCAACCAAATCCAGATTTTCTTAAACTGACAATTCCCCATTTCAAGGACAACCCGGAATTAGGTTTGGTTCAGGCTAGATGGGCTTTTGTGAACAAGGATGAAAACCTATTGACGCGTCTTCAAAATATTAACTTGTGTTTTCACTTTGAGGTGGAACAGCAGGTTAATGGAGTATTCCTTAATTTCTTTGGCTTCAATGGCACTGCTGGTGTTTGGAGAATTAAAGCCCTTGAAGAGTCTGGAGGGTGGCTTGAAAGGACAACTGTAGAAGACATGGACATAGCTGTGAGGGCCCATCTTAATGGCTGGAAGTTTATATTTCTTAATGATGTGAAGGTCCTCTGTGAAGTTCCCGAGTCGTATGAAGCTTACAAGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTCCCAGCAATTATAACTTCTAAGATATCAGCATGGAAGAAGGCAAATTTGATATTATTATTCTTTCTACTAAGGAAGCTTATTCTTCCATTTTATTCTTTCACTTTATTCTGCATAATTCTTCCTCTAACCATGTTTGTCCCAGAAGCTGAACTTCCCGTATGGATAATCTGTTATGTGCCTATTTTTATGTCATTTCTGAACATTCTTCCATCCCCGAAATCTTTTCCTTTTATCGTTCCGTATCTTCTATTTGAAAACACAATGTCTGTCACCAAGTTCAATGCCATGATATCTGGGTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTAACAAAAAAGGCTGGCAGGTCATCAGAATCTGACCTACTGGCAGCTGCTGAAAGGGAGTCGAAGATTGCGAATCAAGCGCAGATCTATAGAGGGGCTTCTGAGAGTGATCTTTCTGAGTTGAACCGCTTAAGAGAACAGAAGGAAGTAGCTATTGCACCTATCAAAAAAGTTAACAAGATATACAAGAAAGAGCTCGCGCTTGCATTTCTTTTACTTGTAGCTTCAATCAGGAGTCTCTTGGCAGCACAAGGAGTCCACTTCTACTTCTTGCTGTTCCAAGGTGTGACCTTCCTCCTTGTAGGTCTTGATCTAATTGGGGAGCAAATGAGCTGA 2082 41.45 MAPRLGFSWWWGENTQRGTPVVVTMEKPNFSVVEIDGADAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLATVLWTLLGTIKKRLIYRQGVDIENEKLGKGKLLFGVIRVFLVTSLAILAFEILAYFKGWHYFQNPNLHLPQASDLQGLLHTLYVTWLTFRADYIAPLIQTLSKFCIVLFLIQSLDRMVLSFGCLWIKYKRIEPKIEGDPFKLNDVEGAGCKYPMVLVQIPMCNEREVYEQSISAVCQIDWPKDNLLIQVLDDSSDESIQMLIKAEVAKWSQKGVNIIYRHRLLRTGYKAGNLKSAMSCDYVQGYEFVAIFDADFQPNPDFLKLTIPHFKDNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYKKQQHRWHSGPMQLFRLCLPAIITSKISAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWIICYVPIFMSFLNILPSPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSSYEWIVTKKAGRSSESDLLAAAERESKIANQAQIYRGASESDLSELNRLREQKEVAIAPIKKVNKIYKKELALAFLLLVASIRSLLAAQGVHFYFLLFQGVTFLLVGLDLIGEQMS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1647979 1650882 + evm.model.ptg000002l.1368 HCH12g0291 555138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0291 693 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 447 IPR029044 -
HCH12g0291 693 FunFam probable xyloglucan glycosyltransferase 5 221 446 - -
HCH12g0291 693 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 149 692 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
HCH12g0291 693 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 529 IPR029044 -
HCH12g0291 693 Pfam Glycosyl transferase family group 2 322 523 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0291 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0291 HCH-Chr12:1647979 HCH13g0797 HCH-Chr13:7679576 1.80E-272 dispersed
HCH12g0291 HCH-Chr12:1647979 HCH12g0532 HCH-Chr12:3125612 3.80E-267 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0407 . 210 374 REM Transcription Factor Family AT1G49480 70.5 1.1e-58 223.4
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH12g0291 . 1 693 REM Transcription Factor Family AT2G24630 78.0 0.0e+00 1102.0
HCH12g0532 . 1 701 REM Transcription Factor Family AT2G24630 64.5 4.0e-264 907.5
HCH13g0797 . 6 668 REM Transcription Factor Family AT2G24630 67.0 1.5e-258 889.0
HCH4g0567 . 5 699 REM Transcription Factor Family AT2G24630 64.5 8.0e-257 883.2
HCH5g1039 . 4 690 REM Transcription Factor Family AT2G24630 62.6 1.9e-245 845.5
HCH2g0407 . 210 374 REM Transcription Factor Family AT1G49480 70.5 1.1e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38