Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0292 ATGGAATTTAAAAAAGATAAATTTGTGAGGTTTTATCCAGATGAAAAACAGAATCTTGAGCTTAAATGGGAGAAAAATGACCAGAAGAAGCACTTTGAATTCCCATTGCCAGTTTTCAAAATAGGGACTGCTCCTTTATCCAAATTAGATGCGGGCATTGGTGATAGAAGTAGAATTAACAACAGTTATGCAACTTTTGGGAGGTTTAAGATTTTTCTAGAAAACAATGGGCCATATCAGAAGAGAATTCTCAATCCTGAAAGTGACATTATATTGAAATGGAACAAGATTTTCTTGTTTTCTTGCTTGATGGCACTTTTCGTTGATCCACTTTTTTTCTATCTTCCATCAGTGATTCACCATGATAAGTCATCATGTATGACAACTGATTCAAATTTGGGAATTGTTGTGACGTTTTTTCGTACCGTTGCTGATGTTTTCTATCTGTTTCATATGGTTTTGAAATTTCGAATGGCTTATGTATCACCCACTTCAAGAGTTTTTGGAAAAGGTGAACTTGTTACTGATCCAAAGAAGATTGCCAAACGATACTTGAAATCAGATTTCTTTTTAGATCTCATTGCATCTCTGCCTCTTCCTCAGATTATGATATGGTTTATTATGCCAGCGATCCGAAGCTCTCACGAGGACCACACGAATAATACCCTTGTGTTGATAGTCCTGCTTCAGTACATCCCAAGATTTTACCTGATTTTCCCATTAAGTTCACATATTACAAAAACTACTGGTGTTGTCACTAAGACTGCTTGGGCAGGGGCTGCATATAACCTTGTATTGTATATGCTAGCTAGTCATGTCTTAGGAGCATCGTGGTATTTGCTATCAATCGAGCGCCATGCTATGTGCTGGAAATTCGCTTGCAGAAGGGAATTCAGTCCTACGAAATGCCTTCTTGACTACCTGGATTGTGGTACTTTAAATTATGAAAGCCGCAGGAAATGGGAAGTAAATACTACTGTCTTTAGCCAGTGTTCTCCAGATGAAGATGTTGTTTTCAACTACGGCATATTTGCAGATGCAATTGCGAAAAACGTCATCTCCTCTGGCTTTTTTCATAAGTATTTCTATTGTCTATGGTGGGGCTTACAGAATTTAAGTTCCTATGGTCAAGGTTTGGCCACGAGCATCTTCGTAGGAGAAACTTTATTTGCCATTCTTATTGCTATAATGGGTCTGGTCTTGTTTGCACATTTAATTGGAAATATGCAGACTTATTTACAATCTATCACTATAAGACTGGAGGAGTGGAGAGTCAAGCGTCGAGATACTGAGGAATGGATGAAACATCGACAACTCCCTGGAGATTTGCAAGAACGTGTTAGGAGATTTGTTCAGTACAAGTGGCTTGCAACTCGAGGAGTTGACGAGGAGTCAATTTTACAGGCCCTTCCAGCAGATCTCCGACGAGATATTCAGCGTCACCTATGCCTTGACCTTGTTCGACGTGTTCCTTTTTTTGCACAAATGGATGGTCAGCTACTTGACGCAATCTGCGATCGATTGGCATCCTCTTTATGTACAGAAGGCACTTACATTGTTCGTGAAGGGGATCCCGTTACTGAGATGCTTTTTATTATCAGAGGGATGCTTGAGAGCTCCACAACAGATGGAGGACGGACAGGGTTCTTCAATTCTATAACCTTAAGACCTGGTGATTTTTGTGGGGAAGAACTTCTTGCTTGGGCATTGCTTCAAAAGTCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAGAGCAATAACTGAAGTGGAAGCCTTTGCGCTACGGGCAGAGGATCTCAAATTCGTCGCTAATCAGTTTCGAAGACTCCATAGCAAGAAGCTACAACACACTTTCCGGTTTTATTCTTACCATTGGAGAACTTGGGCTGCTTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAACGGAGGATTATGGCAAAGACACTCAGTATGCAGGAATCTTTCTCATTGACTCCTGAGAAGCCAGTGGCAGAAGAAGCAGAACAAGAAGAGGAAGAACATGTTACTCCACGTTCGAAATACTCTCAAGCGAAACAACACCTCGGTGTCACAATATTGGCTTCAAGATTTGCTGCAAACACACGTAGAGGAGCACAAAAGATGAAGGATGTTGGAATATCCAACCTTCGAAAGCCGGATGAGCCAGACTTTTCAGAAGACCCAGATGGTTAA 2199 40.93 MEFKKDKFVRFYPDEKQNLELKWEKNDQKKHFEFPLPVFKIGTAPLSKLDAGIGDRSRINNSYATFGRFKIFLENNGPYQKRILNPESDIILKWNKIFLFSCLMALFVDPLFFYLPSVIHHDKSSCMTTDSNLGIVVTFFRTVADVFYLFHMVLKFRMAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFFLDLIASLPLPQIMIWFIMPAIRSSHEDHTNNTLVLIVLLQYIPRFYLIFPLSSHITKTTGVVTKTAWAGAAYNLVLYMLASHVLGASWYLLSIERHAMCWKFACRREFSPTKCLLDYLDCGTLNYESRRKWEVNTTVFSQCSPDEDVVFNYGIFADAIAKNVISSGFFHKYFYCLWWGLQNLSSYGQGLATSIFVGETLFAILIAIMGLVLFAHLIGNMQTYLQSITIRLEEWRVKRRDTEEWMKHRQLPGDLQERVRRFVQYKWLATRGVDEESILQALPADLRRDIQRHLCLDLVRRVPFFAQMDGQLLDAICDRLASSLCTEGTYIVREGDPVTEMLFIIRGMLESSTTDGGRTGFFNSITLRPGDFCGEELLAWALLQKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIMAKTLSMQESFSLTPEKPVAEEAEQEEEEHVTPRSKYSQAKQHLGVTILASRFAANTRRGAQKMKDVGISNLRKPDEPDFSEDPDG 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1652645 1656123 - evm.model.ptg000002l.1367 HCH12g0292 555139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0292 732 FunFam Cyclic nucleotide-gated ion channel 1 490 608 - -
HCH12g0292 732 FunFam Cyclic nucleotide-gated ion channel 1 419 483 - -
HCH12g0292 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 67 709 - -
HCH12g0292 732 Gene3D - 97 417 - -
HCH12g0292 732 SUPERFAMILY cAMP-binding domain-like 422 614 IPR018490 -
HCH12g0292 732 SMART cnmp_10 492 623 IPR000595 -
HCH12g0292 732 CDD CAP_ED 492 623 IPR000595 -
HCH12g0292 732 ProSiteProfiles cAMP/cGMP binding motif profile. 492 622 IPR000595 -
HCH12g0292 732 Gene3D Helix hairpin bin 420 483 - -
HCH12g0292 732 MobiDBLite consensus disorder prediction 706 732 - -
HCH12g0292 732 MobiDBLite consensus disorder prediction 659 685 - -
HCH12g0292 732 Pfam Ion transport protein 95 418 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g0292 732 Gene3D Jelly Rolls 490 610 IPR014710 -
HCH12g0292 732 Pfam Cyclic nucleotide-binding domain 515 604 IPR000595 -
HCH12g0292 732 SUPERFAMILY Voltage-gated potassium channels 87 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0292 HCH-Chr12:1652645 HCH9g0157 HCH-Chr9:926005 2.50E-240 dispersed
HCH12g0292 HCH-Chr12:1652645 HCH8g0989 HCH-Chr8:45991506 6.00E-279 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0292 K05391 - csv:101211072 1216.83