Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0297 ATGGCCGTCGACCTGATGAGTTTCCCAAAAATAGACGATCAAATCGCCATTCAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACCTAATACGTCTCCTCTCTCACAAAAATCAAACTTCAAATCTTAATCAGAATCAAAATCATATCGATTGCTCTGACCTAACCGACGCCACCGTTTCCAAATTTAAAAAAGTTATCTCCCTCCTCAACCGGACCGGTCACGCCCGGTTCAGACGTGGACCGGCAGCCGCGGCGACGGCTTCTTCAGCACCTCAATCTCAATCGATTAACCTTACTCCGATTCCGTTTACTTCTCCGGCGCCGGTGAAGATTATCCAGTCTCAGCCTCAAAGTATGACGCTCGATTTCACGAGGCCGAATATTCTGAACTCTAACCCTAAGGGAACGGATCTTGAATTCTCTAAGGAGACTTTTAGTGTTTCTTCCAGCTCCTCGTTTATGTCGTCTGCGATTACGGGAGATGGTAGCGTTTCGAATGGGAAATTGGGAACTTCTATCTTTTTGACACCGGCACCGACGGTTTCAGGTGGAAAGCCGCCGCTTTCGGTGGCGCCGTTCAAGAAGAGGTGTCATGAACATGATCATTCTGAAGATATGTCTGGGAAATTCTCTGGTTCTACTTCTGCTTCTGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAACCGAGTAAAGAAAACGATCCGTGTCCCAGCGATCAGTTCAAAAATCGCCGATATTCCACCAGACGAGTATTCATGGAGGAAATACGGTCAGAAACCAATCAAGGGTTCCCCATACCCAAGGGGATATTATAAGTGTAGTACGATGAGAGGATGTCCGGCGAGGAAACACGTGGAGAGGGATCCGAATGATCCAGCGATGTTGATTGTAACGTACGAAGGAGAGCATCGTCACACACAGACCTCGTTGCCGGAAAACATGTCGGCCGGCGGTGGAGTAGCTTTAGTTTTTGAGTCAAATTGA 990 47.47 MAVDLMSFPKIDDQIAIQEAASQGLKSMEHLIRLLSHKNQTSNLNQNQNHIDCSDLTDATVSKFKKVISLLNRTGHARFRRGPAAAATASSAPQSQSINLTPIPFTSPAPVKIIQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLTPAPTVSGGKPPLSVAPFKKRCHEHDHSEDMSGKFSGSTSASGKCHCSKRRKNRVKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQTSLPENMSAGGGVALVFESN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1703611 1705133 + evm.model.ptg000002l.1362 HCH12g0297 555144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0297 329 Pfam WRKY DNA -binding domain 251 307 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0297 329 Gene3D WRKY domain 237 310 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0297 329 MobiDBLite consensus disorder prediction 204 226 - -
HCH12g0297 329 SUPERFAMILY WRKY DNA-binding domain 247 309 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0297 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 311 IPR044810 GO:0003700(InterPro)
HCH12g0297 329 Pfam Plant zinc cluster domain 196 247 IPR018872 -
HCH12g0297 329 FunFam WRKY transcription factor 65 233 310 - -
HCH12g0297 329 SMART WRKY_cls 249 309 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0297 329 ProSiteProfiles WRKY domain profile. 244 310 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0297 HCH-Chr12:1703611 HCH8g1073 HCH-Chr8:46622608 4.60E-77 dispersed
HCH12g0297 HCH-Chr12:1703611 HCH14g0304 HCH-Chr14:31675357 3.30E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32655 PF03106 WRKY 6.10E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0297 - - - 0.0