Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0304 ATGCATAACCAAAGTTTTCTCTCAGTTTCCTTGTTTCTTCTTCTCTTAACTTCCAGTTTTGCTCAACTTCAGATAAATTATTACCATGATTCATGTCCTGATGTTGAGTCCATTGTCCAGTCTGCAGTCAAACTCAAATTCCAACAGACTTTTGTCACTGCCCCTGCCACTCTCAGGCTCTTCTTCCATGACTGCTTTGTCAGGGGATGTGATGCTTCTGTGTTGCTTCATTCAAGAAACCACACTTCAGAGAAAGATAATTCAGATAATCTTTCACTGGCTGGAGATGGATTTGACACTGTGATTAAGGCCAAGGCTGCTGTTGAGAGTGTGCCTGGATGCAAAAACAAGGTCTCTTGTGCTGACATATTGGCCTTGGCCACCAGAGATGTTGTAGTGTTGACAGGAGGGCCATCTTATGCAGTGGAGTTGGGACGGCGAGACGGGCGGATCTCTACGAAAAAGAGCGTTCGACACCATCTTCCTCTGCCTGATTTTAGATTGGATCAACTCAATGCCATGTTTGCAAGACATGGTCTCTCTCAAACAGACATGATTGCTCTCTCAGGTGCACATACAATTGGGTTCTCACACTGCAGGCATGTCAGCAAGAGGCTATATAACTTCAACAAACAAAACAGAATTGATCCATCACTCAATTTAGAATATGTGAAGGAGCTCAAACAAGAATGCCCGTTAAACGTGGACGAGAGAATTGCCATCGATATGGACTCGAACTCGTCTTTTACATTCGACAACATGTACTTCAAGAACGTGCAGATGGGGAAAGGGCTATTCACATCTGATCAAGTGTTGTTCACAGATGCAAGATCAAGAAAAACCGTGAACCTATTTGCTTCCAACAACACAGCTTTTGAGCAGGCTTTTGTGATTGCCATGACAAAGCTTGGGAGGGTGGGGGTCAAAACAAGAAACCAGGGGGAAATCAGAAATGACTGCACTGCTGTGAACTAG 975 44.1 MHNQSFLSVSLFLLLLTSSFAQLQINYYHDSCPDVESIVQSAVKLKFQQTFVTAPATLRLFFHDCFVRGCDASVLLHSRNHTSEKDNSDNLSLAGDGFDTVIKAKAAVESVPGCKNKVSCADILALATRDVVVLTGGPSYAVELGRRDGRISTKKSVRHHLPLPDFRLDQLNAMFARHGLSQTDMIALSGAHTIGFSHCRHVSKRLYNFNKQNRIDPSLNLEYVKELKQECPLNVDERIAIDMDSNSSFTFDNMYFKNVQMGKGLFTSDQVLFTDARSRKTVNLFASNNTAFEQAFVIAMTKLGRVGVKTRNQGEIRNDCTAVN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1734955 1736333 + evm.model.ptg000002l.1355 HCH12g0304 555151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0304 324 Pfam Peroxidase 39 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 CDD secretory_peroxidase 22 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH12g0304 324 PANTHER - 9 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 FunFam Peroxidase 162 303 - -
HCH12g0304 324 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
HCH12g0304 324 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 SUPERFAMILY Heme-dependent peroxidases 22 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
HCH12g0304 324 Gene3D Peroxidase, domain 2 162 303 - -
HCH12g0304 324 ProSiteProfiles Plant heme peroxidase family profile. 22 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0304 324 FunFam Peroxidase 26 171 - -
HCH12g0304 324 Gene3D - 26 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0304 HCH-Chr12:1734955 HCH14g0352 HCH-Chr14:32436022 1.10E-112 dispersed
HCH12g0304 HCH-Chr12:1734955 HCH3g0311 HCH-Chr3:1968209 1.40E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0304 K00430 - csv:101218982 533.102