Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0309 | ATGCCAGGGCTAACTTGTAACGCCTGCAACGAAGTATTCCAAGACGGCGTGGACCAAAAGCTTCATTACAAATCTGAATGGCATCGCTACAATCTTAAGCGCAAGGTAGCTGGGGTGCCTGGGGTTACGGAGGCGTTATTTTTAGCTAGATATGCTGTTGCTCAAGAGAGCGATAAATCAAGCGAAACCTCATTGTCATACTCTTGTGGTCTTTGTGGCAAAGCTTATCGGAGTTCCAAAGCTCATGCCCAACATCTTAAATCTAAGAGTCACATCATCCGAGCTTCGCAGGGAACATTTGATCAAGAAGTGGAGAAGCCAATAATTAAGGCCCTTCCTCAGCGAGTCTCAAATAAGACACCCCAACAAGTTAAGGAGGAAGATGATGAGGACGACGAAGAGAGTGAAGAGTGGGAGGAAGTTGATCCTGAGGAAGAATTATTTGGTGATGCTACAAAGTCCTTGGCCGACTTAGATGTTAATGATTTGAGCAATGATGTAGATGGGAGCAATGATGTAGATGGGAGCGATGATGATGATGCTATGGAGGTGGAGTTGGATCCATCATGCTGCTTTATGTGTGATCTTGAGCATGATGCCATTGACAGCTGTATGGTTCACATGCATAAACAACATGGACTTTTCATTCCTGATGTTGAATATTTGAAAGATCCTAACGGCCTACTTACTTATCTTGGCCTGAAGGTTAAGAGGGATTTCATGTGTCTGTACTGCAATTATAAATGTCAGCCTTTTAACAGCTTGGAAGCCGTGAGGAAGCATATGGAAGCAAAAAGCCACTGCAAAGTGCATTATGGTGATGGAGACGATGATGAAGAAGTAGAGTTGGAAGAATTTTATGACTACAGCAGCAGTTATGTGAATGAAACTGGCAACCAGCTGGTACCATCAGGTGATACAGCCAATTCTGTTGAACTTGGAAGTGGTGGGGCTGAGCTCGTATTAATCCGAAAAACTGGTGATGGGGCATCGACCAAAAGACTTGGTTCCCGGGAATTTTTGCGGTATTATCGGCAGAAACCACGACCAACACCTGAGAACGCTGTGGCCATAACAACCGCGTTGGCATCAAGGTATAGGAGCATGGGATTAGCAACAGTGCAGTCAAGAGAAAAAATGGTGAGAATGAAAGTGATGAAAGAAATGAACAGAACGGGGTTGGAAGTAATGCGTTCCAAAATTGGATTGAAGAACAACGTAATCCGCAACTTGCCTAAGAATGTTCCATACTAG | 1254 | 44.1 | MPGLTCNACNEVFQDGVDQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARYAVAQESDKSSETSLSYSCGLCGKAYRSSKAHAQHLKSKSHIIRASQGTFDQEVEKPIIKALPQRVSNKTPQQVKEEDDEDDEESEEWEEVDPEEELFGDATKSLADLDVNDLSNDVDGSNDVDGSDDDDAMEVELDPSCCFMCDLEHDAIDSCMVHMHKQHGLFIPDVEYLKDPNGLLTYLGLKVKRDFMCLYCNYKCQPFNSLEAVRKHMEAKSHCKVHYGDGDDDEEVELEEFYDYSSSYVNETGNQLVPSGDTANSVELGSGGAELVLIRKTGDGASTKRLGSREFLRYYRQKPRPTPENAVAITTALASRYRSMGLATVQSREKMVRMKVMKEMNRTGLEVMRSKIGLKNNVIRNLPKNVPY | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1759738 | 1761962 | + | evm.model.ptg000002l.1350 | HCH12g0309 | 555156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0309 | 417 | SUPERFAMILY | beta-beta-alpha zinc fingers | 174 | 282 | IPR036236 | - | |
HCH12g0309 | 417 | SMART | ZnF_U1_5 | 1 | 35 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
HCH12g0309 | 417 | SMART | ZnF_U1_5 | 64 | 98 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
HCH12g0309 | 417 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 69 | 91 | IPR013087 | - | |
HCH12g0309 | 417 | PANTHER | ZINC FINGER PROTEIN 622 | 1 | 415 | IPR040025 | GO:0030687(PANTHER)|GO:0042273(PANTHER) | |
HCH12g0309 | 417 | MobiDBLite | consensus disorder prediction | 111 | 146 | - | - | |
HCH12g0309 | 417 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 36 | IPR036236 | - | |
HCH12g0309 | 417 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 28 | IPR013087 | - | |
HCH12g0309 | 417 | SMART | c2h2final6 | 240 | 267 | IPR013087 | - | |
HCH12g0309 | 417 | SMART | c2h2final6 | 4 | 28 | IPR013087 | - | |
HCH12g0309 | 417 | SMART | c2h2final6 | 67 | 91 | IPR013087 | - | |
HCH12g0309 | 417 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 97 | IPR036236 | - | |
HCH12g0309 | 417 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 67 | 91 | IPR013087 | - | |
HCH12g0309 | 417 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
HCH12g0309 | 417 | Pfam | C2H2 type zinc-finger (2 copies) | 191 | 293 | IPR041661 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32656 | PF12756 | zf-C2H2_2 | 3.20E-25 | CL0361 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0309 | K14816 | - | csv:101219700 | 575.859 |