Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0309 ATGCCAGGGCTAACTTGTAACGCCTGCAACGAAGTATTCCAAGACGGCGTGGACCAAAAGCTTCATTACAAATCTGAATGGCATCGCTACAATCTTAAGCGCAAGGTAGCTGGGGTGCCTGGGGTTACGGAGGCGTTATTTTTAGCTAGATATGCTGTTGCTCAAGAGAGCGATAAATCAAGCGAAACCTCATTGTCATACTCTTGTGGTCTTTGTGGCAAAGCTTATCGGAGTTCCAAAGCTCATGCCCAACATCTTAAATCTAAGAGTCACATCATCCGAGCTTCGCAGGGAACATTTGATCAAGAAGTGGAGAAGCCAATAATTAAGGCCCTTCCTCAGCGAGTCTCAAATAAGACACCCCAACAAGTTAAGGAGGAAGATGATGAGGACGACGAAGAGAGTGAAGAGTGGGAGGAAGTTGATCCTGAGGAAGAATTATTTGGTGATGCTACAAAGTCCTTGGCCGACTTAGATGTTAATGATTTGAGCAATGATGTAGATGGGAGCAATGATGTAGATGGGAGCGATGATGATGATGCTATGGAGGTGGAGTTGGATCCATCATGCTGCTTTATGTGTGATCTTGAGCATGATGCCATTGACAGCTGTATGGTTCACATGCATAAACAACATGGACTTTTCATTCCTGATGTTGAATATTTGAAAGATCCTAACGGCCTACTTACTTATCTTGGCCTGAAGGTTAAGAGGGATTTCATGTGTCTGTACTGCAATTATAAATGTCAGCCTTTTAACAGCTTGGAAGCCGTGAGGAAGCATATGGAAGCAAAAAGCCACTGCAAAGTGCATTATGGTGATGGAGACGATGATGAAGAAGTAGAGTTGGAAGAATTTTATGACTACAGCAGCAGTTATGTGAATGAAACTGGCAACCAGCTGGTACCATCAGGTGATACAGCCAATTCTGTTGAACTTGGAAGTGGTGGGGCTGAGCTCGTATTAATCCGAAAAACTGGTGATGGGGCATCGACCAAAAGACTTGGTTCCCGGGAATTTTTGCGGTATTATCGGCAGAAACCACGACCAACACCTGAGAACGCTGTGGCCATAACAACCGCGTTGGCATCAAGGTATAGGAGCATGGGATTAGCAACAGTGCAGTCAAGAGAAAAAATGGTGAGAATGAAAGTGATGAAAGAAATGAACAGAACGGGGTTGGAAGTAATGCGTTCCAAAATTGGATTGAAGAACAACGTAATCCGCAACTTGCCTAAGAATGTTCCATACTAG 1254 44.1 MPGLTCNACNEVFQDGVDQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARYAVAQESDKSSETSLSYSCGLCGKAYRSSKAHAQHLKSKSHIIRASQGTFDQEVEKPIIKALPQRVSNKTPQQVKEEDDEDDEESEEWEEVDPEEELFGDATKSLADLDVNDLSNDVDGSNDVDGSDDDDAMEVELDPSCCFMCDLEHDAIDSCMVHMHKQHGLFIPDVEYLKDPNGLLTYLGLKVKRDFMCLYCNYKCQPFNSLEAVRKHMEAKSHCKVHYGDGDDDEEVELEEFYDYSSSYVNETGNQLVPSGDTANSVELGSGGAELVLIRKTGDGASTKRLGSREFLRYYRQKPRPTPENAVAITTALASRYRSMGLATVQSREKMVRMKVMKEMNRTGLEVMRSKIGLKNNVIRNLPKNVPY 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1759738 1761962 + evm.model.ptg000002l.1350 HCH12g0309 555156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0309 417 SUPERFAMILY beta-beta-alpha zinc fingers 174 282 IPR036236 -
HCH12g0309 417 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH12g0309 417 SMART ZnF_U1_5 64 98 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH12g0309 417 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
HCH12g0309 417 PANTHER ZINC FINGER PROTEIN 622 1 415 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
HCH12g0309 417 MobiDBLite consensus disorder prediction 111 146 - -
HCH12g0309 417 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
HCH12g0309 417 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
HCH12g0309 417 SMART c2h2final6 240 267 IPR013087 -
HCH12g0309 417 SMART c2h2final6 4 28 IPR013087 -
HCH12g0309 417 SMART c2h2final6 67 91 IPR013087 -
HCH12g0309 417 SUPERFAMILY beta-beta-alpha zinc fingers 58 97 IPR036236 -
HCH12g0309 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 91 IPR013087 -
HCH12g0309 417 MobiDBLite consensus disorder prediction 126 146 - -
HCH12g0309 417 Pfam C2H2 type zinc-finger (2 copies) 191 293 IPR041661 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32656 PF12756 zf-C2H2_2 3.20E-25 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0309 K14816 - csv:101219700 575.859