Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0311 ATGCCTCGAAAGGTGAATTACGGTCTTGATTACAAGATAGATTACGAGGACTACGATGATTACGATTACGATAATGATTTAGATGTAGAAGAAAAAGGCAAAGCACCTGAGTCTAGGGAAGAAACTAAAAGGCATGGGCTTTGGCGATGTTCGATTTGCACTTACGACAATGAAGACAGTTTTTATGTATGTGATATATGTGGAGTTTTACGCCAGCCTTTGGTCAACAAAAGCGACACCATTGATAATGGAACAGTTGAGAGCATTTGCAAAGATTCCAGAGTTTCCATAATGGCCAAGTCTCTCTTTGCATCATCGCCGCATCAGATACCCAAAATGGTCGTAAAATTTCAAGAGGGGAACAATGAATTTGTGGACGAAAAGGAAGATAACATCCACAAGATTGGGAATATCCAGGGTCATTTGCATGAATTCCATAAGGCTTTTAGTACTCTTAGTCATTTCCGTACTAACATAGTCCCTTTTAAATTTGATGTTCCATCCCCAGATGATATGGTTTCTAATGGAATGCATTCCTCAAAAAATGGTTTAAGAGCTGTCAACCTGAGAGACATGAAATCCTCAGCGTCAGTATTTTCATCAGACATCACTAAGGAAGGTGCAAATAATGTCGTATCAACTACTGAAAGTGTATATCCCTCGTCTACTGTTTTGCCAAAGGGTAGACTAGATAGTATAGGAGATACACAATCAAGTTCTAAAAATTCAGAAAGCTCATCTGCATCATCTAGAAAAAGTAAAGTGGGTACCAAAGAGAGCAATACATTAATCAACGTAACAACAAATTTACAATCACGTGATAACAGATCAACGGGCACTTCCACATCAAAATCAGCAGGCAAATTTGAGAGTGTGGATGAGAGAAATAACACTTCTGTGGAGAAGCAAAAGCCTCAAAAGCTGGCCAGTAGTTCTAACGACAAGGTGCTAAATGTCAAATCGGCCTATGCAAATTATATGAGTGCGCTTGGAAATACGTCACATGTGCAGTTTAAACCTGATGAATGGATGCTTCCTGATCAAGCTGCGGATACTTTAACTCAGCTGAATCTTGCTATAGTTGGTCATGTCGATTCTGGAAAATCAACTCTTTCAGGAAGACTTCTGCACCTATTGGGACGTATATCTCAAAAAGATATGCACAAATATGAAAAAGAAGCAAAGTCTCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCATTGGATGAGAGTGCAGAGGAAAGGGAGCGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCCAAAAGATATCATGTTGTTGTGCTCGATTCCCCTGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCTGCGATTCTTGTTATAGATGCTTCTATTGGTGCATTTGAAGTTGGTATGGACAGTTCAAAGGGACAGACAAGAGAACATGTACAACTAATCAGAAGTTTTGGTGTTGATCAAATTGTCGTTGCCGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTATGAATTTATTAAGCTGCAACTTGGAACCTTTTTTCGTTCTTGTGGTTATAAGGACTCATCGTTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAAAATCTGGTGACTGCTGCTTCTGATGTTCAGTTGTTGTCGTGGTATCGTGGACCTAATTTGTTGGAGGCAATTGATTCTCTTCAACCTCCCACTAGAGATTTCTCAAAGCCTCTGATTATGCCAATATGCGATGTTATTAGATCACTTTCGCTTGGACAAGTGTCTGCCTGTGGTAAACTTGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTCATCATGCCATCTGGAGATAAAGGTACTGTGCGCTCTTTAGAACGCAATTCTCTGCCTTGCAAAATTGCTAGAGCTGGAGACAATGTGACTGTTAGTCTACAAGGAGTTGAAGGAAGGAGTGTGGTGTCTGGGGGTGTGCTATGCCATCCTGATTTTCCAGTTTCTGTTGCAAAGCATCTGGAATTGAAGGTTCTTTGCTTGGACTTTTCTACGCCAATATTAGTTGGATCTCAGTTGGAAATTCACGTACACCACGCAAAGGAGGCTGCTAGAGTTGCAAAGATAGTTTCATTGATTGATTCAAAGACTGGAAAGCTCACAAAGAAGGCACCACGCTGTCTCACTGCTAAACAAAGTGCAGTGATTGAGGTTGTTCTGCAAAGCCCAATTTGTGTCGAAGCATTCTCAACCAGTAAAGCTCTTGGGAGGGTATTTCTAAGAGCGCTCGGGAGAACTGTAGCCGTTGGCATCGTAACTCGACTAATTGGAGATCCCGAATAA 2355 41.19 MPRKVNYGLDYKIDYEDYDDYDYDNDLDVEEKGKAPESREETKRHGLWRCSICTYDNEDSFYVCDICGVLRQPLVNKSDTIDNGTVESICKDSRVSIMAKSLFASSPHQIPKMVVKFQEGNNEFVDEKEDNIHKIGNIQGHLHEFHKAFSTLSHFRTNIVPFKFDVPSPDDMVSNGMHSSKNGLRAVNLRDMKSSASVFSSDITKEGANNVVSTTESVYPSSTVLPKGRLDSIGDTQSSSKNSESSSASSRKSKVGTKESNTLINVTTNLQSRDNRSTGTSTSKSAGKFESVDERNNTSVEKQKPQKLASSSNDKVLNVKSAYANYMSALGNTSHVQFKPDEWMLPDQAADTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKDMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASIGAFEVGMDSSKGQTREHVQLIRSFGVDQIVVAVNKMDVVEYSKDRYEFIKLQLGTFFRSCGYKDSSLSWIPLSAMANQNLVTAASDVQLLSWYRGPNLLEAIDSLQPPTRDFSKPLIMPICDVIRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKGTVRSLERNSLPCKIARAGDNVTVSLQGVEGRSVVSGGVLCHPDFPVSVAKHLELKVLCLDFSTPILVGSQLEIHVHHAKEAARVAKIVSLIDSKTGKLTKKAPRCLTAKQSAVIEVVLQSPICVEAFSTSKALGRVFLRALGRTVAVGIVTRLIGDPE 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1766589 1772913 - evm.model.ptg000002l.1348 HCH12g0311 555158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0311 784 Pfam Elongation factor Tu GTP binding domain 356 574 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
HCH12g0311 784 Gene3D Translation factors 581 670 - -
HCH12g0311 784 Pfam GTP-eEF1A C-terminal domain-like 678 777 IPR054696 -
HCH12g0311 784 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 353 584 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 PANTHER TRANSLATION FACTOR 354 777 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
HCH12g0311 784 MobiDBLite consensus disorder prediction 214 313 - -
HCH12g0311 784 Pfam Elongation factor Tu domain 2 603 666 IPR004161 GO:0005525(InterPro)
HCH12g0311 784 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 676 780 IPR009001 -
HCH12g0311 784 SUPERFAMILY Translation proteins 581 705 IPR009000 -
HCH12g0311 784 CDD HBS1_C_III 671 779 - -
HCH12g0311 784 Gene3D Translation factors 674 781 - -
HCH12g0311 784 SUPERFAMILY Ran binding protein zinc finger-like 45 71 IPR036443 -
HCH12g0311 784 FunFam elongation factor 1-alpha isoform X4 674 783 - -
HCH12g0311 784 CDD EF1_alpha 357 576 - -
HCH12g0311 784 PRINTS GTP-binding elongation factor signature 436 446 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 PRINTS GTP-binding elongation factor signature 416 424 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 PRINTS GTP-binding elongation factor signature 452 463 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 PRINTS GTP-binding elongation factor signature 357 370 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 PRINTS GTP-binding elongation factor signature 497 506 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g0311 784 FunFam Translation elongation factor EF-1 580 670 - -
HCH12g0311 784 FunFam Elongation factor 1 alpha-like protein 345 577 - -
HCH12g0311 784 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
HCH12g0311 784 Gene3D - 345 577 IPR027417 -
HCH12g0311 784 MobiDBLite consensus disorder prediction 232 287 - -
HCH12g0311 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 592 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0311 HCH-Chr12:1766589 HCH13g0416 HCH-Chr13:2860275 4.90E-77 dispersed
HCH12g0311 HCH-Chr12:1766589 HCH6g1411 HCH-Chr6:47944001 1.30E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0311 K14416 - csv:101219939 1169.84